Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0676 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAGGGGAGATGGACAGCGGAAGAAGATGAGATCTTGGCGAAATACATTCAGGCCAATGGCGAAGGTTCATGGAGGTCATTGCCTAAAAATGCAGGATTATTAAGGTGCGGGAAGAGTTGCAGGCTGAGATGGATTAACTATTTGAGAGCTGACCTTAAAAGAGGGAACATTACTGCTGAAGAGGAAAATACCATCGTTAAGTTGCACGCTTCTTTTGGTAACAGGTGGTCTTTGATAGCAAGTCACTTAGCAGGAAGAACGGACAACGAGATAAAAAACTACTGGAATTCTCACCTCAGCAGGAAAATTTACAGTTTCACAGGTGCAGGTGCAGGAGGGGCCATGGATATTACACCTAAAGTAGTAGCGTCTATTCCTCCGAAGCGCAAAGCTGGTAGAACAAGCCGTTGGGCCATGAAAAAGAACAAAACCTACACCCAAAATATTAATGCCAACGCCAACGATACAACAATCACCCACAGACCCAAACAGAACAGTGACGCCGCCGTCAAGGCCCCGGAAGCTGCTGACGTGGCAGAGGCGGTGGATGAAGAAATTACCGATGATGACGTCGTCGTATCGGGGCCGTGTGATGAATTGGAGGATTTCATTAATGACGAGGGTGGTGGAGCGTTGGGTTTTATTGACAACACGTTGGAAAGTTGCTTGGCGGAAACATGTGGAGTTTGGGACTTAGTATTAAGTGAAGAGAGAGAAAGCAATGATGACGTGGGCAACAACAAAAAGGCATCGAGTGAGCTTTCATTAGAATCGGATCAACACTGGGATTGGGAGAGCTTGATAGAGTTTAACGACTATAATTGGGCAGAGCAGCAAGAGATTGGGAGTAGTATTAATCATAATGTTGTGGATTACTCGGAAGGTTGTAGTAATACTACTAATTGGGCAGAGCAGCAGGAAAAACTACTCACGTGGCTTTGGGAGGAAGATGATGATTGGGAAAGCGATAGCAGCAAAAGATTGGGAGAGACAGATACAACTCGGATACTACAAGACGACAAAATTATGGTTGATTGGTTTCTCTCTCCTCCAGTAATAAATTAG 1104 0.4511 MGRAPCCEKVGLKKGRWTAEEDEILAKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEENTIVKLHASFGNRWSLIASHLAGRTDNEIKNYWNSHLSRKIYSFTGAGAGGAMDITPKVVASIPPKRKAGRTSRWAMKKNKTYTQNINANANDTTITHRPKQNSDAAVKAPEAADVAEAVDEEITDDDVVVSGPCDELEDFINDEGGGALGFIDNTLESCLAETCGVWDLVLSEERESNDDVGNNKKASSELSLESDQHWDWESLIEFNDYNWAEQQEIGSSINHNVVDYSEGCSNTTNWAEQQEKLLTWLWEEDDDWESDSSKRLGETDTTRILQDDKIMVDWFLSPPVIN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0676 367 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aed8g0676 367 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed8g0676 367 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aed8g0676 367 PANTHER MYB TRANSCRIPTION FACTOR 2 334 - -
Aed8g0676 367 CDD SANT 16 61 IPR001005 -
Aed8g0676 367 Gene3D - 71 116 - -
Aed8g0676 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aed8g0676 367 Gene3D - 11 67 - -
Aed8g0676 367 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed8g0676 367 CDD SANT 71 112 IPR001005 -
Aed8g0676 367 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 334 - -
Aed8g0676 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aed8g0676 367 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aed8g0676 367 SMART sant 66 114 IPR001005 -
Aed8g0676 367 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0676 Aed-Chr8 5882564 5887092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0676 1 156 MYB Transcription Factor Family AT5G49330 68.639 3.93e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed8g0676 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0676 K09422 - gmx:100814275 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0676 8 5882564 5887092 Aed8g0676 8 5882564 5887092 ECH