Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0670 ATGGAGGAAGAGGCTAAGGATTCTGAGGAAGAGGCTGAAGATTCTAAGCTGGAACAATCAGGGGGAAGAAATAGAAAACAAAGCCCCCCTAGTTCGAAAATTGGTATAGCTGCTACTCCTGGATTGTCAAAATCAGTAAGAGAGGCATCGAATGCCTTACCAGATTCTACCAGTCCACAGGTTTTGCCAAATGTCAATAATGGTGAAAACTCTTCAACCATTCCAGGAAATAAGAGCAGACCTTATCAAGACTTGAGCTTTCATAATGTTGATGACTCAAAGATAAGCTATCAGGCTCCTGATGTTTCTGGACATTCCACATTATGTCAGTTACCTGATAAATATGTAAAGACCAGTGAGTCTAAGAATGCTTTTTCTCCAAAGGCATTTGGCTGCCAGGATCTTGGCAATACAGGAAATACAAATTCATCTGGTCAGCAACCTGATCTGCATGATGACACCTCAGAATCTAAGAAGTTGGTAAGTGACTTGGGAGCAACTTCTGCAAGTGCTGCTGGAGTTGCATGTTCAAATGAAAAGCTTAAAACTGCGAGTTATTCCAAGAAGAACCAAAAGGGATTTACTCTCCCAAGGATCTTAGATGAAAGCTCAGGCAGAGAGGGCAACAACAGTGATAACAGTAAGGTTAAAAAGGCTAGTGAGGGTGTCAAATCTAACAGTGTTGAAGTTTCTGGGAAAGGAAATGATTTTATTAAAGAAGACGTGCCAATTAGTTTATTGCCTCAAAAGAGGATAAATGAAGCTTCTCTTACTAAATTAAAATCAAGAAAGAAGACTTCTGTCCCATCAGCAAATGGTCAATCTAAAGGATTAAAAGTGACATCTCAGGTTGATGAGCCACCTGAAGCTGATGACTATCTTTCTATAGGCAAAGATGGTATAAATAACTCAAATACTTGCTTAGTTTCCAAACCTTCAGGCTCTACCTCCAACTCACTGGCATTTGATGAGCCCTTTTCAAGAAATGCTAGCCCAAAATCTGTTCAGTGTGATAATGTCTGTCAGAATTCACCAAAAACGGCAGTTCAGAGCTTAAGTGAGTCAAAAATTAATGGCAAGCCTGGTATCACAGGTTCTGGAATGCAACAAGTTGATGGTAATGAAGCAGAGCAACATAATGTCTCTAAAAATCTTGATTGTTCACCTCTGGGAAACAAAAAGTCATGTAATGTGGAATCTGCTGGTTGTACTAATTTGGATTTAAGCACAGAAGAAATTAATAAACTGGCTAGAAAATCACCCCGAAAGAAGTCGGTTGCCAAGAGAAGTTTGGGTTCTAAACCTAAAGTAGGCACCACTGCTAAACAGAAAAAATCACTTTCCCTGAATAAAACTACCCTGCAAGGTGAAGATGTAACTTTTTCCAGCAGAAGCAAAGAGATTGCAACTAGTGATGTGAAGATGCATCAGGAATGTCCCCTAATCCTTGATGTTAATAAAACAACAGAGCAAGAAACAGTTAGTAAAAATATAGAAGATGGTGGTGAAAGAACTGAGCTTTTGGACGATGAAACTGAGGCTCCAGATGACAAATGTGAATATGAGTTGGGAATGTCACTTGATGAAGACTTGGTTCATCTTTCAAAAAAGCCAGATACAGCAAAAGAAGAGAAATCAGAAGCAATTTGCCCTGCAACAAAAAGTGAAGAGGCAATGCCTCCTAAGAAAGGCACAAGTAAAACTGTAAAACAAAAAACATCTTCACTGGCAGTAAAGCATCAAGCTAGAAAACGTTCTGCTGGTGAAGTCAAGGCCACAGTTAGTAAATATGCAGAAGATGATGGTGACAAAACTGAGCTTGTGGACGATGTAACTGAGGCTCCAGATGACAAGTGTGAATACGAGTTAGGAATGCCACTCAATGAAGAATCTGCTCATCTTTCAAAAAAGCCAGATACAGCAAAAGAAGAGAAATCAGAAGCAATTTCCCCTGCAACAAAAAGTGAAGAGGCAATGCCTCCTAAGAAAGGCACAAATAAAACTGAAAAACAAAAAACATCTTCACTGGCAGTAAAGCATCAAGCTAGAAAACGTTCTGCTGGTAAAGTCAAAGCCACAGTTAGTAAATATGCAGAAGATGATGGTGAAAGAACTGAGCTTGCAGACCATGAAACTGAGGCTCCAGATGACAAATGTGAATATGAGTTAGGAATGTCACTGAATGAAGAATCTGTTCATCTTTCAAAAAAGTCAGATACAGAAAAAGAAGAGAAGTCAGAAGAAATTTCCCCTGCAACAAAAAGTGAAGAGGCAATGCCTCCTAAAAGAAGCATAAAAAAGACTGAAAAGCAGAAGTCATCTTCACTGGTAGTAAATAATCAAGCAAGAAAACGTCCTGCTGGCAAAGCCAAGGCTACAGTTGCCAAGGAATTATTGAAATCTAAAGTGGCAGTATCAGGGGAGAAAATTCCTAATGAGATGGAGCATGAGCCAGAGATAGAAACCATGGAAGAAATGTCCTTTCCTGCTGATAAAAGTGACCACCCTGTACAAAGAAATAAGTCAGAGAATTTAGCTGAAGAGGAGAAGGAGAATAGACCAATTGATGCAGAGCAGGATCAAGTGAAGGGCAGAAGCGATGGCAATCCAACTATTAAGTCTAGAGTAAGACCAGCAAAGATCAAGTCTACAAAATCGGGGCTCAATCCATCCATGTCAAAATCTAACACGAGAATAAAAGCTGAAGCTGCGTGTTTTATATTAAGTGGGCATCGACTACAGAGGAAAGAGTTTCAACAACTAATCAAGCGTTTAAAAGGAAGGGTTTGCCGAGATTCTCACCAGTGGTCATATCAGGCGACACACTTCATTGCTCCAGACCCCATACGCAGGACTGAGAAATTTTTTGCTGCTGCTGCATCAGGAAGGTGGATTCTTAAAAGTGATTACCTAACTTCCAGTAGCCAGGCAGGAAAACTGTTGGCAGAGGAGCCTTATGAGTGGCACAAGAATGGTCTCAGTGAGGATGGTGCAATCAATATGGAGGCTCCCAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGTCATGGTGCCTTCTATGGAATGCATATTGTTGTATACGGTGATTGCATTGCCCCACCTTTGGATACTCTGAAACGTGTGGTGAAAGCTGGAGATGGAACAATATTAGCAACTTCTCCTCCTTATACTCGGTTCCTTAGCAGCGGTATCGACTATGCTGTAGTTAGCCCTGGCATGCCACGTGTTGACATGTGGGTCCAAGAGTTCTTAAAACACGAGATACCTTGTGTTGTAGCAGACTACTTGGTTGAGTATGTTTGCAAGCCCGGGTTCTCCCTTGAGAGACATGTATTGTATGGCACTCATGCTTGGGCAGAGAAATCATTTGATAAACTTAAAGGTAAAGCAGAAGAGATTGTTGAAGAACTCGTTGCTCTTGCGGATTCCAGTGATGATAATGATGATATAATTTGTCAAGTATGTGCATCCCGAGACAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTTCCGTGGGCTGTGGAATCGGTACTCATATCGATTGCTGTGATCCTCCACTAACACATGTCCCTGAGGAGGATTGGTTTTGCCCAAAATGCAGTGGCAGTATCGGCAGTATCAGTGGCACCCGAAACTGCTCAAACAATCCCAGTAAAAGGAAAAAGACTACTGTTTTATCTGCATCCAACGGTGAATGGCAAGAGGTTTCTAAACTGTCCGTGAAGTTCAGCATTTATGCCTAG 3750 0.4112 MEEEAKDSEEEAEDSKLEQSGGRNRKQSPPSSKIGIAATPGLSKSVREASNALPDSTSPQVLPNVNNGENSSTIPGNKSRPYQDLSFHNVDDSKISYQAPDVSGHSTLCQLPDKYVKTSESKNAFSPKAFGCQDLGNTGNTNSSGQQPDLHDDTSESKKLVSDLGATSASAAGVACSNEKLKTASYSKKNQKGFTLPRILDESSGREGNNSDNSKVKKASEGVKSNSVEVSGKGNDFIKEDVPISLLPQKRINEASLTKLKSRKKTSVPSANGQSKGLKVTSQVDEPPEADDYLSIGKDGINNSNTCLVSKPSGSTSNSLAFDEPFSRNASPKSVQCDNVCQNSPKTAVQSLSESKINGKPGITGSGMQQVDGNEAEQHNVSKNLDCSPLGNKKSCNVESAGCTNLDLSTEEINKLARKSPRKKSVAKRSLGSKPKVGTTAKQKKSLSLNKTTLQGEDVTFSSRSKEIATSDVKMHQECPLILDVNKTTEQETVSKNIEDGGERTELLDDETEAPDDKCEYELGMSLDEDLVHLSKKPDTAKEEKSEAICPATKSEEAMPPKKGTSKTVKQKTSSLAVKHQARKRSAGEVKATVSKYAEDDGDKTELVDDVTEAPDDKCEYELGMPLNEESAHLSKKPDTAKEEKSEAISPATKSEEAMPPKKGTNKTEKQKTSSLAVKHQARKRSAGKVKATVSKYAEDDGERTELADHETEAPDDKCEYELGMSLNEESVHLSKKSDTEKEEKSEEISPATKSEEAMPPKRSIKKTEKQKSSSLVVNNQARKRPAGKAKATVAKELLKSKVAVSGEKIPNEMEHEPEIETMEEMSFPADKSDHPVQRNKSENLAEEEKENRPIDAEQDQVKGRSDGNPTIKSRVRPAKIKSTKSGLNPSMSKSNTRIKAEAACFILSGHRLQRKEFQQLIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRWILKSDYLTSSSQAGKLLAEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMHIVVYGDCIAPPLDTLKRVVKAGDGTILATSPPYTRFLSSGIDYAVVSPGMPRVDMWVQEFLKHEIPCVVADYLVEYVCKPGFSLERHVLYGTHAWAEKSFDKLKGKAEEIVEELVALADSSDDNDDIICQVCASRDRGDVMLICGDESGSVGCGIGTHIDCCDPPLTHVPEEDWFCPKCSGSIGSISGTRNCSNNPSKRKKTTVLSASNGEWQEVSKLSVKFSIYA 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0670 1249 MobiDBLite consensus disorder prediction 416 448 - -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 694 724 - -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 829 895 - -
Aed8g0670 1249 ProSiteProfiles BRCT domain profile. 906 988 IPR001357 -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 257 297 - -
Aed8g0670 1249 SMART BRCT_7 1016 1103 IPR001357 -
Aed8g0670 1249 SMART BRCT_7 897 978 IPR001357 -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 1 91 - -
Aed8g0670 1249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1117 1206 IPR013083 -
Aed8g0670 1249 SUPERFAMILY BRCT domain 906 992 IPR036420 -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 829 863 - -
Aed8g0670 1249 ProSiteProfiles Zinc finger PHD-type profile. 1149 1205 IPR019787 -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 262 281 - -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 536 551 - -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 632 651 - -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 582 624 - -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 356 383 - -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 133 150 - -
Aed8g0670 1249 CDD BRCT_TopBP1_rpt7 905 978 - -
Aed8g0670 1249 Gene3D BRCT domain 899 1014 IPR036420 -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 660 676 - -
Aed8g0670 1249 Pfam PHD-finger 1151 1203 IPR019787 -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 197 234 - -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 120 164 - -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 536 798 - -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 44 91 - -
Aed8g0670 1249 Gene3D BRCT domain 1015 1116 IPR036420 -
Aed8g0670 1249 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 690 1202 IPR044254 -
Aed8g0670 1249 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 591 IPR044254 -
Aed8g0670 1249 Pfam BRCA1 C Terminus (BRCT) domain 909 972 IPR001357 -
Aed8g0670 1249 SMART PHD_3 1151 1203 IPR001965 -
Aed8g0670 1249 SUPERFAMILY FYVE/PHD zinc finger 1143 1205 IPR011011 -
Aed8g0670 1249 MobiDBLite consensus disorder prediction 732 752 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0670 837 1134 Core DNA Replication Machinery Family AT4G02110 59.032 3.30e-121 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed8g0670 BRCT 2.6e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0670 K10728 - gmx:100799144 1131.32