Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0664 ATGGAGCTCTCTGTGGTTGCAAAAAACATGGAAGAAGTTGTATTGCTGGTTGATGATTTGAGATTACTTTCTGGGATTTCTCGCTGCAGAATATGTCATGAAGAGGAATTTGAAAGCTCCGAAACCTTGGAAGCTCCTTGTGCTTGTTCTGGGACTGTTAAGTTTGCTCACAGAGATTGCATTCAGAGATGGTGCAATGAGAAAGGAAATACAACCTGTGAAATATGCCTCCAGTCCCGTTCCAATATCATAAGAGATGGGGATAGCCTACAAATTTCAAGGATTGAAGAAGAAGCTTTAAACAGAAGAATAGTAGTGGGCATAGTTGAAGGAAACAATTACTCTGAGTGCACGTATGCTGCGGATAGAAGCGCGGCTTGTTGTCGATCCCTGGCTTTAGCTTTCACTCTTATCTTGCTTGTAAGACATCTTTTTGCACTTCTTACTGATGGAATGGAAGATTATCCATTTACAATTCTTACGGTTTTTTTACTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATTAAGGCGATCGGAGCCATTCATGACAATATTAAGCGTCACCATCATCAGGATTCTGACGATGACTCATCGATATCTGATGGAGATGATGAAGAAAATGAGACACCAAATGATGAGATTTCAAGACATTCACAATCATAG 672 0.3988 MELSVVAKNMEEVVLLVDDLRLLSGISRCRICHEEEFESSETLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQSRSNIIRDGDSLQISRIEEEALNRRIVVGIVEGNNYSECTYAADRSAACCRSLALAFTLILLVRHLFALLTDGMEDYPFTILTVFLLRASGIIIPMYIIIKAIGAIHDNIKRHHHQDSDDDSSISDGDDEENETPNDEISRHSQS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0664 223 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270
Aed8g0664 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 85 IPR013083 -
Aed8g0664 223 ProSiteProfiles Zinc finger RING-type profile. 29 76 IPR001841 -
Aed8g0664 223 SMART ringv_2 28 77 IPR011016 GO:0008270
Aed8g0664 223 MobiDBLite consensus disorder prediction 192 223 - -
Aed8g0664 223 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 6 219 IPR033275 -
Aed8g0664 223 Pfam RING-variant domain 29 76 IPR011016 GO:0008270
Aed8g0664 223 SUPERFAMILY RING/U-box 28 78 - -
Aed8g0664 223 CDD RING_CH-C4HC3_MARCH 29 76 - -
Aed8g0664 223 Pfam Protein of unknown function (DUF3675) 88 181 IPR022143 -
Aed8g0664 223 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 6 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0664 Aed-Chr8 5786935 5789528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0664 29 113 C3H Transcription Factor Family AT2G37950 33.721 4.02e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0664 - - gmx:100776501 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0664 8 5786935 5789528 Aed8g0664 8 5786935 5789528 ECH
Aed2g2269 2 26204288 26206656 Aed8g0664 8 5786935 5789528 PCT