Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0640 ATGGATCCCAAATCCCATTTCCAAGTTATTATTCTTTTTCTTCTCTCATTGTTACACATTACTTCCAGCTATAGTACTGATAAACAAGGCGATTTTGACAAATGGGTATCGTGGAATGTGAAGAAACATAGTGAGAAAACGACAATTTTGAAAGCCAAATGGAAGGTCGCTGCAGATTTGAAGCTGAGGCAGACTGAGAGTAACAAAGTTAGCATAAGAGTTAGCCAAGACGGTGCTGCTGATTTCAAAACCATTACAGAAGCTCTTGATAGCATTCCACCACGCAACACCAGAAGAGTCATAGTGTCCATTGCACCGGGTGTTTATAGGGAGAAGGTCATGATCCCCAGAACATTGCCTTTTATTACATTGCTAGGAGACGCCGTGGATCCACCAACCATTACCGGAAATGATACTGCTTCTATCTCCGGAAGGACGTTCCAGAGTGCAACTGTTGCTGTGGATTCTAGCTATTTTGTGGCCATCAACATCAAATTTGAGAACACTGCTCCGCATGTGATTGGAAGGAGGGGGGAACAAGGTGTGGCGCTGCGAATCTCAGGAACCAAAGGTGCATTCTACAATTGCAGTTTCTATGGGGCACAAGACACTCTATATGATCACAAAGGTCTTCATTACTTTAACAACTGCTCTATTCAAGGTTCAGTTGATTTCATCTTCGGTTCCGGGAGGTCCCTTTACGAGAATTGCTATTTAAAATCCACAACCAAGAAGACAGCTTCCATCACTGCTCAAAAGCGTACAAATTCGTCACTGGAGAGTGGATTCTCGTTCAAAAGCTGCACAGTAACAGGTAGCGGACAGATTTATCTGGGAAGAGCATGGGGAGATTATTCCAGAGTTGTTTTCTCTTACACCTACATGGACAACATAGTTCTCCCCAAAGGATGGAGTGATTGGGGTGACCAAAAGCGTGACTCAAGAGTATATTATGGAGAATACAAATGTAGTGGGCCAGGAGCTAACTTGGCTGGAAGAGTGTCATGGGCACGAGTTCTTACGGATGAAGAGGCCAACCCTTTTCTTGGGATCCAATTCATTGAAGGGGACACTTGGCTCATTACTCCCTAG 1092 0.4405 MDPKSHFQVIILFLLSLLHITSSYSTDKQGDFDKWVSWNVKKHSEKTTILKAKWKVAADLKLRQTESNKVSIRVSQDGAADFKTITEALDSIPPRNTRRVIVSIAPGVYREKVMIPRTLPFITLLGDAVDPPTITGNDTASISGRTFQSATVAVDSSYFVAINIKFENTAPHVIGRRGEQGVALRISGTKGAFYNCSFYGAQDTLYDHKGLHYFNNCSIQGSVDFIFGSGRSLYENCYLKSTTKKTASITAQKRTNSSLESGFSFKSCTVTGSGQIYLGRAWGDYSRVVFSYTYMDNIVLPKGWSDWGDQKRDSRVYYGEYKCSGPGANLAGRVSWARVLTDEEANPFLGIQFIEGDTWLITP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0640 363 ProSitePatterns Pectinesterase signature 2. 219 228 IPR033131 -
Aed8g0640 363 PANTHER PECTINESTERASE 17 361 - -
Aed8g0640 363 Pfam Pectinesterase 72 357 IPR000070 GO:0030599|GO:0042545
Aed8g0640 363 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 17 361 - -
Aed8g0640 363 SUPERFAMILY Pectin lyase-like 71 360 IPR011050 -
Aed8g0640 363 Gene3D - 66 362 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0640 Aed-Chr8 5558538 5561052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0640 72 360 Carbohydrate Esterase AT5G47500 47.811 1.32e-93 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0640 K01051 - cit:102614801 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0640 8 5558538 5561052 Aed8g0640 8 5558538 5561052 ECH
Aed2g1906 2 23701641 23704075 Aed8g0640 8 5558538 5561052 PCT