Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0638 ATGGATGGTAAGAAAGTACAATTAACACAAGTGAAGGTCCAGCAGCATAATAATGAAACCGAGATAAGCCTCAGAAAAGGTCCATGGACGGTTGACGAGGACACCATTCTCGTCAATTACATCGCCACCCACGGTGAAGGTCACTGGAACTCCGTCGCACGATGCCTAAGGAGGAGTGGTAAGAGTTGCAGATTAAGGTGGCTAAACTACTTGCGCCCCGACGTGAGGCGTGGAAATATCACACTCCAAGAACAAATATTAATTCTCGATCTTCACTCTCGCTGGGGCAATAGATGGTCGAAGATTGCTGAGCAGCTACCAGGAAGAACAGACAATGAAATAAAGAACTATTGGAGGACGAGAGTGGTAAAACAGGCGAAGCAGCTCAAGTGCGATGTCAACAGCAAACAGTTCAGAGACACGTTGCGTTACGTGTGGATGCCGCGCTTGCTGGAGCGGGTTCAGCCCACGTCTCTAACTCACGACCCAAACCCATGTGAAGAAGACGTTGGACCCTTTCTTCACCAAAACGGGTTACACTTACAGGGTTCGGATCCAGGAACGGAGTGGACCAGACCGAACCACAGCGATGTCTCGGACCCGTGGCCAGGTTTGTTGGAACAGGGGAGTGGTGAGTCGTTGGAAAGTTTGTGGAGTGACGAGAATGTGTGGTTTTTGCAACAACTTTCCGATGAACTACAAATCAAATACAATTCCCTTCCGTGA 726 0.4904 MDGKKVQLTQVKVQQHNNETEISLRKGPWTVDEDTILVNYIATHGEGHWNSVARCLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRYVWMPRLLERVQPTSLTHDPNPCEEDVGPFLHQNGLHLQGSDPGTEWTRPNHSDVSDPWPGLLEQGSGESLESLWSDENVWFLQQLSDELQIKYNSLP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0638 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Aed8g0638 241 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 232 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aed8g0638 241 SUPERFAMILY Homeodomain-like 23 118 IPR009057 -
Aed8g0638 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
Aed8g0638 241 Gene3D - 81 122 - -
Aed8g0638 241 PANTHER MYB TRANSCRIPTION FACTOR 3 232 - -
Aed8g0638 241 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Aed8g0638 241 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Aed8g0638 241 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Aed8g0638 241 CDD SANT 28 71 IPR001005 -
Aed8g0638 241 CDD SANT 81 120 IPR001005 -
Aed8g0638 241 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Aed8g0638 241 Gene3D - 27 76 - -
Aed8g0638 241 SMART sant 76 124 IPR001005 -
Aed8g0638 241 SMART sant 25 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0638 Aed-Chr8 5528492 5529411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0638 22 157 MYB Transcription Factor Family AT1G48000 73.188 3.45e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed8g0638 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0638 K09422 - gmx:778065 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2302 2 26417242 26417879 Aed8g0638 8 5528492 5529411 PCT