Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0632 ATGGCATCAGCGGGTGTAGCACCTGCTTCTGGATTAAGAGATGTAAATGCAAGTTCTGTGGCTGCTGAAAGGTTGCCAGATGAGATGAATGGCATGAAAATTAGGGATGAAAGGGAAATGGAAGCAACTGTGGTAGATGGAAATGGGACTGAAGCAGGACATATAATTGTTACTACCATTGGTGGTAAAAATGGCCAGCTAAAGCAGACAATAAGCTACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGATATGCAGAGCACTAGCATATATTCACAACTGTATTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTGGTCAATCCTCACACTCACCAGTTAAAGATTTGTGACTTTGGGAGTGCAAAAGTCTTGGTCAAAGGGGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCTGGTCAGCTGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGCCTCTATTCCCTGGGGAAAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACACTGAGTTCAAATTTCCACAAATTAAAGCTCATCCATGGCATAAGATCTTTCACAAGCGTTTACCTCCTGAGGCTGTGGATCTTGTCTCAAGGCTACTGCAATACTCACCAAATCTTCGATGCACAGCTCTGGAGGCCTTGATTCATCCATTCTTTGATGAACTGCGTGATCCAAATACCCGCCTACCAAACGGGCGTTACCTTCCCCCGCTCTTCAACTTCAAAGCCAATGAGCTCAAAGGAGTTCCCCCAGAGATGCTGGTGAAACTGATTCCATCTCATGCAAGAAAGCAGTGTGCCTTGTTTGCGTCATAG 999 0.4394 MASAGVAPASGLRDVNASSVAAERLPDEMNGMKIRDEREMEATVVDGNGTEAGHIIVTTIGGKNGQLKQTISYMAERVVGNGSFGVVFQAKCLETGETVAIKKICRALAYIHNCIGVSHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRLPPEAVDLVSRLLQYSPNLRCTALEALIHPFFDELRDPNTRLPNGRYLPPLFNFKANELKGVPPEMLVKLIPSHARKQCALFAS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0632 332 SMART serkin_6 73 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed8g0632 332 ProSiteProfiles Protein kinase domain profile. 1 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed8g0632 332 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Aed8g0632 332 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 103 330 - -
Aed8g0632 332 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 104 - -
Aed8g0632 332 Pfam Protein kinase domain 104 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed8g0632 332 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Aed8g0632 332 Gene3D Transferase(Phosphotransferase) domain 1 103 324 - -
Aed8g0632 332 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 104 - -
Aed8g0632 332 CDD STKc_GSK3 68 283 IPR039192 -
Aed8g0632 332 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 103 330 - -
Aed8g0632 332 Gene3D Transferase(Phosphotransferase) domain 1 62 102 - -
Aed8g0632 332 SUPERFAMILY Protein kinase-like (PK-like) 72 306 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0632 Aed-Chr8 5480259 5485104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0632 101 287 MAP Kinase Gene Family AT3G45640 40.000 1.42e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Aed8g0632 Pkinase 2.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0632 K00924 - cpap:110817622 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0632 8 5480259 5485104 Aed8g0632 8 5480259 5485104 ECH