Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed8g0623 | ATGAATAATACAACTACTGATTCTGCCGGATTCCTTGGCTCAAGCAACATAAGTGGATTTGGCATGGGGATAGGGATCTCAATTGGGATTCTCGTCCTCATCACAACAATCACACTCACCTCATACTTCTGCACAAGGTCACAAGTGCCAACTCCACCAAGGAGAATAAGAAGAACAAGTAGTTCATCAAACCCTCAACTCATTGAGCTACACCACACAATAGTTGATCTTGGCCTAGATGAAGCCACAATCATGAACTACCCCAAGATGCTCTACTCTGACACTGCCACCGCCGCCAAGCTGAGAAAATCTTCAGATTCCACATCCACAAGCTGCTCCATATGTCTTGGAGATTACAAAGGCTCTGATTTGCTAAGGGTGCTTCCTGATTGTGACCATGTTTTCCATCTCAAGTGCATAGACCCTTGGCTGAGGCTGCATCCAACTTGTCCTCTATGCAGAACATCACCAATTCCAACGCCTCTCTCTACTCCTCTTGCTGAAGTGGTCCCTTTGGCAACAAGGCGAGATTGA | 534 | 0.4625 | MNNTTTDSAGFLGSSNISGFGMGIGISIGILVLITTITLTSYFCTRSQVPTPPRRIRRTSSSSNPQLIELHHTIVDLGLDEATIMNYPKMLYSDTATAAKLRKSSDSTSTSCSICLGDYKGSDLLRVLPDCDHVFHLKCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD | 177 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed8g0623 | 177 | Pfam | Ring finger domain | 111 | 154 | IPR001841 | - | |
| Aed8g0623 | 177 | SUPERFAMILY | RING/U-box | 111 | 159 | - | - | |
| Aed8g0623 | 177 | ProSiteProfiles | Zinc finger RING-type profile. | 112 | 154 | IPR001841 | - | |
| Aed8g0623 | 177 | SMART | ring_2 | 112 | 153 | IPR001841 | - | |
| Aed8g0623 | 177 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 158 | IPR013083 | - | |
| Aed8g0623 | 177 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 177 | IPR045899 | - | |
| Aed8g0623 | 177 | CDD | RING-H2_PA-TM-RING | 114 | 154 | - | - | |
| Aed8g0623 | 177 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN-RELATED | 1 | 177 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed8g0623 | Aed-Chr8 | 5399179 | 5399712 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed8g0623 | 7 | 174 | C3H Transcription Factor Family | AT2G35910 | 57.143 | 7.88e-55 | 171 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed8g0623 | - | - | gmx:100796149 | 251.136 |
Event-related genes