Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0621 ATGGCGATGCAAACCGTTTATCTGAAAGAACATGAAGGACTTGTCCACAATTCTGTTGGACAGTTGTCATCTGTAACTTCAGCTCCATGGTGGAGTGCCTTAGGATCTCAACCAGTTTATGGAGAGTATTGTGGCCAAATCAAACCCTTTTCACTGGAGATTTCCAACTACGTCGACCAATTCGCTGCCGGTAAGCAATCGGTACGAGGAGTTGAACAATTGCTGGATAAAGGTCATACAACTCAGTTTACCATCTTTCCAGATATCTCTTCTTCAGATGATTGCAAGATGACAGGTGATGCACAAAACCCTAATGCAACATTATCACTGCAGTCACCACTTGCTGAGCCCCACAATCGTTATGAGATAGGGTTTAATCAGCCTATGGGACGGATAATGCTTCCAATTAACTTGACATCTGATGATGGACCAACTTATGTAAATGCTAAGCAGTACCATGGAATCCTAAGACGTCGCCAATCACGTGCAAAAGCCGTGCTTGAGAACAAAATGCTAAAACGTCGCAAGCCATATATGCATGAATCACGCCATCTACATGCAATGCGGCGACCGAGAGGATGTGGTGGCCGCTTCTTGAACACAAAATGCTCTGCTGATGGAAATGGTAACAATGAAACTGAAGTGAACAAAACCCGCGGCCGACATCTGCAGTCCAGTGCCTCTCAGAGTTCTGAAGCCCTGCATTCTGAAGTTGGAACCTTAAATTCTTCGAAGGAGACAAATCGGAGCAGTCCAAACATCTCTGGTTCAGAGGTGACTAGCATGTACTCAAGGGAAGGCTTTGATGGCTTCTCTATCAATCCTCTCGGATCCTCCGTCCACTCTCTGGTGGACATGATAGGCAGTGGGCATGGTATCGCCATGCCCACTAAATGGGTTGCTGCAGGTAACTGTTGCAACCTTAAAGTTTGA 933 0.4587 MAMQTVYLKEHEGLVHNSVGQLSSVTSAPWWSALGSQPVYGEYCGQIKPFSLEISNYVDQFAAGKQSVRGVEQLLDKGHTTQFTIFPDISSSDDCKMTGDAQNPNATLSLQSPLAEPHNRYEIGFNQPMGRIMLPINLTSDDGPTYVNAKQYHGILRRRQSRAKAVLENKMLKRRKPYMHESRHLHAMRRPRGCGGRFLNTKCSADGNGNNETEVNKTRGRHLQSSASQSSEALHSEVGTLNSSKETNRSSPNISGSEVTSMYSREGFDGFSINPLGSSVHSLVDMIGSGHGIAMPTKWVAAGNCCNLKV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0621 310 MobiDBLite consensus disorder prediction 202 258 - -
Aed8g0621 310 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 129 - -
Aed8g0621 310 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 130 309 IPR001289 GO:0003700|GO:0006355
Aed8g0621 310 ProSiteProfiles NF-YA/HAP2 family profile. 141 201 IPR001289 GO:0003700|GO:0006355
Aed8g0621 310 MobiDBLite consensus disorder prediction 203 258 - -
Aed8g0621 310 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 144 198 IPR001289 GO:0003700|GO:0006355
Aed8g0621 310 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 130 309 - -
Aed8g0621 310 PRINTS CCAAT-binding transcription factor subunit B signature 175 198 IPR001289 GO:0003700|GO:0006355
Aed8g0621 310 PRINTS CCAAT-binding transcription factor subunit B signature 144 166 IPR001289 GO:0003700|GO:0006355
Aed8g0621 310 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 129 IPR001289 GO:0003700|GO:0006355
Aed8g0621 310 SMART cbf3 140 201 IPR001289 GO:0003700|GO:0006355
Aed8g0621 310 Gene3D - 141 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0621 Aed-Chr8 5381776 5384792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0621 1 310 CCAAT-HAP2 Transcription Factor Family AT3G05690 39.429 4.89e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aed8g0621 CBFB_NFYA 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0621 K08064 - gmx:100808195 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g2045 2 24821410 24825418 Aed8g0621 8 5381776 5384792 PCT