Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0620 ATGAACGACTTGTTCTCCGGCTCCTTCTCCCGCAACAACGACCAAGTCACGCCGGGCAACCACCATGTGATCGAGATGGCAGCAGCGGCATCGCCATCCGAGGGTGGTGCAAACCTCGAAAAGTTCTTCAAAGAAGTTGAGCAGGTAAAAGACGAGCTGAAGGAGCTTGAGCGTCTCCATGAGAACCTACGCGGTTCTCATGAAAAGAGCAAGACCCTTCATAGCGCGAAGGCTGTGAAGGAGCTTCGCTCAAACATGGATGCTGACGTGGCACTCGCTTTAAGAAAAGCGAAGTTTATCAAGGTGCGGCTCGAGGCGCTGGACCGGTCCAACGAGGCAAGCCGGAGCTTGCCTGGTTCAGGACCTGGTTCATCCTCGGATCGGACCAGGACGTCCGTGGTGAGTGGACTCAGGAAGAAGCTGAAGGACTCTATGGACAGCTTCAACGGTCTCAGGCAACAGATATCGTCGGAGTATAGGGAAACCGTGCAGCGTAGATATTACACTGTCACCGGAGAGAACCCTGATGATAAAACCATTGACCTCCTCATTTCCACGGGTGAGAGTGAAACATTCTTGCAGAAAGCGATCCAGGAGCAAGGTAGAGCCAGCGTGATGGACACAATCCAAGAGATTCAAGAGAGGCACGACACAGTGAAAGAGATAGAGAGAAACCTAAACGAGTTGCACCAAGTGTTCTTAGACATGGCCGTGCTGGTGCAGTCCCAGGGCGAACAATTGGACGACATCGAGAGCCATGTGGCGCGCGCCAACTCGTACGTGCGTGGCGGCGTCAGGCAGCTGGTCGTGGCAAGGAAGCATCAGAAGAACACAAGAAAGTGGACCTGCATAGCCATCATATTGCTCATTATCATCATTTTGATTATAGTCCTCCCCATAGTTCTGAGAAATTGA 915 0.5235 MNDLFSGSFSRNNDQVTPGNHHVIEMAAAASPSEGGANLEKFFKEVEQVKDELKELERLHENLRGSHEKSKTLHSAKAVKELRSNMDADVALALRKAKFIKVRLEALDRSNEASRSLPGSGPGSSSDRTRTSVVSGLRKKLKDSMDSFNGLRQQISSEYRETVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQEQGRASVMDTIQEIQERHDTVKEIERNLNELHQVFLDMAVLVQSQGEQLDDIESHVARANSYVRGGVRQLVVARKHQKNTRKWTCIAIILLIIIILIIVLPIVLRN 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0620 304 MobiDBLite consensus disorder prediction 113 132 - -
Aed8g0620 304 SMART tSNARE_6 204 271 IPR000727 -
Aed8g0620 304 SMART SynN_4 34 160 IPR006011 GO:0016020
Aed8g0620 304 CDD SNARE_syntaxin1-like 208 269 - -
Aed8g0620 304 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 12 299 - -
Aed8g0620 304 MobiDBLite consensus disorder prediction 110 135 - -
Aed8g0620 304 PANTHER SYNTAXIN 12 299 IPR045242 -
Aed8g0620 304 Coils Coil 39 66 - -
Aed8g0620 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Aed8g0620 304 Pfam Syntaxin 41 244 IPR006011 GO:0016020
Aed8g0620 304 SUPERFAMILY t-snare proteins 37 264 IPR010989 GO:0016020|GO:0016192
Aed8g0620 304 CDD SynN 39 196 IPR006011 GO:0016020
Aed8g0620 304 ProSitePatterns Syntaxin / epimorphin family signature. 215 254 IPR006012 GO:0005484|GO:0006886|GO:0016020
Aed8g0620 304 Pfam SNARE domain 245 297 IPR000727 -
Aed8g0620 304 Gene3D - 36 169 - -
Aed8g0620 304 Gene3D - 198 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0620 Aed-Chr8 5368473 5371338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0620 28 283 SNARE and Associated Proteins AT3G11820 75.000 2.22e-140 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0620 K08486 - gmx:100793347 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0620 8 5368473 5371338 Aed8g0620 8 5368473 5371338 ECH
Aed2g2042 2 24813695 24814588 Aed8g0620 8 5368473 5371338 PCT