Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0619 ATGAACGACTTGTTCTCCGGTTCCTTCTCCCGCTTCCGCAGCGAGCAGTCCTCGCCGGACCGCCACCACGTCATCGAGATGGGAGGCGCCGCCGCCGGAGGCGGCGGCGCCGGCCGCGAGGTGAACCTGGACAAGTTCTTCGAGGACGTGGAGGGCGTGAAGGAGGAGCTGAAGGAGCTCGAAGCCTTGGCGCAGAGCCTCCGGAGCTGCCACGAGCAGAGCAAGACGCTGCACAACGCCAAGGCCGTGAGGGACCTGCGCTCGCGCATGGACGGCGACGTCTCGGCGGCGCTGAAGAAGGCGAAGCTCATCAAGCTCAAGCTCGAGGCGCTGGAGCGCTCCAATGCCGCGAACCGGAACCTGCCTGGCTGCGGACCGGGCTCGTCCACGGACCGGACCCGGTCCTCTGTGGTCAACGGCCTCAAGAAGAAGCTCAAGGACTCCATGGAGACCTTCAACGAGATTCGCCAGCTGGTTTCCTCCGAGTACCGTGAGACCGTGCAGCGCCGTGAGAGTGAGACCTTCCTTCAGAAAGCCATTCAGGAGCAAGGCAGGGGCAGAATTCTGGACACCATCAACGAGATTCAAGAGAGGCATGATGCGGTCCAAGAGATAGAAAAGAATCTCAAAGAGTTGCACCAAGTGTTCCTTGACATGACAGTGCTGGTGCAGCACCAAGGCGAGCAATTGGATGACATCGAGAGTCACGTGGCGAGAGCTCATTCGTTTGTGCGGACCGGAGCCGAGCAGTTGCAGACTGCGCGGAAGCACCAGAAGAACACCAGGAAATGGACCTGCTACTGTATCATACTTCTTCTGCTGATCATCTTGGTTGTGGTCCTCTTCACTGTGAGGCCGTGGGAAAATAACAGTAGTGGTGGCGGTGGCAGTCAGCCTGCAGCCCCGGCTCAAACACCTCCACCTCCTGTTAATACTTAA 939 0.5953 MNDLFSGSFSRFRSEQSSPDRHHVIEMGGAAAGGGGAGREVNLDKFFEDVEGVKEELKELEALAQSLRSCHEQSKTLHNAKAVRDLRSRMDGDVSAALKKAKLIKLKLEALERSNAANRNLPGCGPGSSTDRTRSSVVNGLKKKLKDSMETFNEIRQLVSSEYRETVQRRESETFLQKAIQEQGRGRILDTINEIQERHDAVQEIEKNLKELHQVFLDMTVLVQHQGEQLDDIESHVARAHSFVRTGAEQLQTARKHQKNTRKWTCYCIILLLLIILVVVLFTVRPWENNSSGGGGSQPAAPAQTPPPPVNT 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0619 312 SUPERFAMILY t-snare proteins 41 247 IPR010989 GO:0016020|GO:0016192
Aed8g0619 312 Gene3D - 39 175 - -
Aed8g0619 312 ProSitePatterns Syntaxin / epimorphin family signature. 198 237 IPR006012 GO:0005484|GO:0006886|GO:0016020
Aed8g0619 312 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 7 170 - -
Aed8g0619 312 Coils Coil 43 70 - -
Aed8g0619 312 CDD SNARE_syntaxin1-like 191 253 - -
Aed8g0619 312 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 171 292 - -
Aed8g0619 312 Coils Coil 192 212 - -
Aed8g0619 312 Gene3D - 189 284 - -
Aed8g0619 312 SMART SynN_4 38 164 IPR006011 GO:0016020
Aed8g0619 312 CDD SynN 43 170 IPR006011 GO:0016020
Aed8g0619 312 MobiDBLite consensus disorder prediction 1 21 - -
Aed8g0619 312 Pfam SNARE domain 228 280 IPR000727 -
Aed8g0619 312 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 192 254 IPR000727 -
Aed8g0619 312 PANTHER SYNTAXIN 171 292 IPR045242 -
Aed8g0619 312 PANTHER SYNTAXIN 7 170 IPR045242 -
Aed8g0619 312 MobiDBLite consensus disorder prediction 290 312 - -
Aed8g0619 312 Pfam Syntaxin 172 227 IPR006011 GO:0016020
Aed8g0619 312 Pfam Syntaxin 45 170 IPR006011 GO:0016020
Aed8g0619 312 SMART tSNARE_6 187 254 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0619 Aed-Chr8 5364202 5367347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0619 27 309 SNARE and Associated Proteins AT3G11820 66.773 4.15e-135 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0619 K08486 - gmx:100809258 463.766