Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0615 ATGTTGGTGGCCAGTGACCACGTATTAACTGTTCAAGTTGAGCTCTTCCCATTGGAGTTAATTGGAAAAGTCGTTTGTCAGAAACAGCTTCATTTTTCCGTGTTTTCACTTTCCCCTAATTTGACACGGAACCACTATATATTGCACCCACCCACCCCCACTCCCTCTCTCATCTTTTTCAACTCTCTCACAGCACAAAACTCTAAAACTCAAAGCTCCAAATTCATTCATAACATGGAGGAGATCGACGTGCCTCCGTTCTTCGTGTGTCCCATTTCCCTCGAACTCATGAAGGACCCTGTTACTGTCTCCACCGGCATAACCTACGACCGTGACAGCATCGAGAAGTGGCTCTTCGCCTCCAAGAACGACACGTGTCCCGTCACGAAGCAGCACCTCCTCCCGGACCTCACTCCCAACCACACGCTCCGCAGACTCATCCAGGCCTGGTGCACCGTCAACGCCTCCCACGGCGTCCAGCGAATCCCCACTCCAAAACCACCCGTCGACAAAAACCTCATCGGGAAACTCCTCCGCGACGCGGTTTCCGCCTCGGACACCCCAAGCCTCCAGCTCCGGTCACTCCGAGCCCTCAAATCCATCGCCTCGGAGTCACAAACTAACAAACGCAGCATCGAATCCGCATCAAACGCGGTCAGTTCGCTAGCCTCGATTATAACGATCGCCACCACCAACGCGGCCAACGTGCTGGACGACGTCGAGCTGGAGTTGAAAACAACCGCAGCCGACGAAGCGTTGAGCCTGTTAAACAACATTCAGCTGTCGGATAACGGTTTGAAGTCCTTACTAAACCATCCAGAGTTTATAAACTCGTTAAGGAAAATCATGCAGAGAGGAATCTACGAGTCACGCGCCTACGCGGTTTTCTTGCTGAATTCGTTAACCGAGGTGGCGGATCCGGCGCAGTTGATTAACCTGAAAACCGATTTGTTTGGTGAACTGGTTCAAGTGCTGAAGGATCAGGTTTCGGAGAAGGCCTCGAAGGCGACGCTGAGGACGCTGCTGCAGGCGTGTCCGTGGGGGAGGAACAGGGTGAAGGCGGTGGAGGCCGGCGCGGTGCCGGTGCTGGTTGAGCTTCTTCTCGAATGCAAGGAGAGGAAACTGATTGAAATGATGCTGGTTTTGCTGGAGATACTCTGCCAAAGCGCGGACGGGAGGGCCGGGCTGCTGTCCCACGCCGCAGGGTTGGCTATCGTGGCGAAGAAGATTCTGAGAGTGTCCACGATGGCCAACGACAGGGCGGCGAAGATTCTGCTCTCGGTGTGCAGATTCTCCGCCACGCCCGGCGTGGTGCAGGAGATGGTGCAGCTGGGGGTCGTGGCGAAGCTGTGTCTGGTGCTGCAGGTGGACAGCGGGAACAAGGCGAAGGAAAAAGCGAGGGAGATTCTGAAACTGCATGCTAGGGCGTGGAGGAACTCCCCTTGCATACCTCACAATTTGCTCTCTTCGTATCCGATATAA 1482 0.5459 MLVASDHVLTVQVELFPLELIGKVVCQKQLHFSVFSLSPNLTRNHYILHPPTPTPSLIFFNSLTAQNSKTQSSKFIHNMEEIDVPPFFVCPISLELMKDPVTVSTGITYDRDSIEKWLFASKNDTCPVTKQHLLPDLTPNHTLRRLIQAWCTVNASHGVQRIPTPKPPVDKNLIGKLLRDAVSASDTPSLQLRSLRALKSIASESQTNKRSIESASNAVSSLASIITIATTNAANVLDDVELELKTTAADEALSLLNNIQLSDNGLKSLLNHPEFINSLRKIMQRGIYESRAYAVFLLNSLTEVADPAQLINLKTDLFGELVQVLKDQVSEKASKATLRTLLQACPWGRNRVKAVEAGAVPVLVELLLECKERKLIEMMLVLLEILCQSADGRAGLLSHAAGLAIVAKKILRVSTMANDRAAKILLSVCRFSATPGVVQEMVQLGVVAKLCLVLQVDSGNKAKEKAREILKLHARAWRNSPCIPHNLLSSYPI 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0615 493 SMART Ubox_2 87 150 IPR003613 GO:0004842|GO:0016567
Aed8g0615 493 PANTHER WDSAM1 PROTEIN 79 492 IPR045185 GO:0061630
Aed8g0615 493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 161 IPR013083 -
Aed8g0615 493 SUPERFAMILY ARM repeat 169 478 IPR016024 -
Aed8g0615 493 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 79 492 - -
Aed8g0615 493 CDD RING-Ubox_PUB 88 131 IPR045210 -
Aed8g0615 493 SUPERFAMILY RING/U-box 79 157 - -
Aed8g0615 493 Pfam U-box domain 84 153 IPR003613 GO:0004842|GO:0016567
Aed8g0615 493 ProSiteProfiles U-box domain profile. 83 157 IPR003613 GO:0004842|GO:0016567
Aed8g0615 493 Gene3D - 169 480 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0615 Aed-Chr8 5293904 5295385 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0615 80 492 U-box Gene Family AT2G35930 54.762 2.25e-161 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0615 - - gmx:100795263 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0615 8 5293904 5295385 Aed8g0615 8 5293904 5295385 ECH
Aed8g0615 8 5293904 5295385 Aed2g2038 2 24786825 24788084 PCT