Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0614 ATGGAAGAAATTGAAGTTCCTCAATACTTCATATGCCCAATATCCCTACAAATCATGAAGGACCCCGTGACGGCCATAACGGGGATAACCTACGACCGAGAAAGCATAGAGCAATGGCTATTCTCAAACAAGAACACAACATGCCCCGTGTCCAAACAAGCCCTTCCAAGAGACTCTGATCTAACCCCTAACCACACCCTTCGGCGATTGATCCAAGCTTGGTGTACCCAAAATGCTTCACTTGGAATTGTTCGGATTCCAACCCCGAAACCACCACTCAGCAAAATCCAAGTCCTTAAACTCCTCAACAATGATGACCCCAAAAGCCTCGTGAAGTTGGAGATTCTTGCCGCGGAGAGTGAGAGGAACAGGAAGTGCTTGCTAGAAGCTGGTGTCCCAAGGGTCATGATCATGTTCGTTGTGAATTGCTATAGAAAGGGTCAAATTCAAAAGGGTCTCGAAGAAGCTCTTAGCATATTGCAATTTGTCAAAATCCCCAAAGAGGAAGACAACGACGACCAAATACTGGAAGCACTAACATGGGTTCTAAGCCGTGACGAAATGAAAAACGCAATCGCCGTGAAAACCCACGCGGTTCAAGTGCTGAAAAAAATCATCAACAAAAACGACACGTGTCACGTCCTGAAGCGACTGAAACCGGAGTTCTTCTCAACAATGGCAAACATTCTAAAACGACAACACGAAATAACACAACAGGGCATGAATGCTGCACTTCACGTCCTTCTAAGCGCTTCTTCCACCACACGGAACAGAATGGCGATGGTGGAAGCGGGTCTGGTCCACGAGCTCGTCGAGATCGAGCTCGCGGCGCCGGAGAAGAGGACCACGGAACTCACGCTGGCAATTCTGTTCCAGCTGTGTTCCTGCGCCAACGGGAGGGCGGAGTTTCTGAGCCACGAGGGGTCCGTGGCGGTGGTGACGGAGCGGATCCTGAGGGTCTCGGCGGCGGCGGACGACAGGGCCGTGTTTGTTTTGTCGTTGGTTTTCGGGGACGAACGCGGTTCTGCAGGAGATGCTGAGAGTGGGAGCTGTGGAGAAGCTCTGCATGGTGCTTCAGGCCGATTGCGCGAAATATTTGAAGGACAGAGCGATGGAGATTCTCAAGGAGCACTCTGA 1137 0.5075 MEEIEVPQYFICPISLQIMKDPVTAITGITYDRESIEQWLFSNKNTTCPVSKQALPRDSDLTPNHTLRRLIQAWCTQNASLGIVRIPTPKPPLSKIQVLKLLNNDDPKSLVKLEILAAESERNRKCLLEAGVPRVMIMFVVNCYRKGQIQKGLEEALSILQFVKIPKEEDNDDQILEALTWVLSRDEMKNAIAVKTHAVQVLKKIINKNDTCHVLKRLKPEFFSTMANILKRQHEITQQGMNAALHVLLSASSTTRNRMAMVEAGLVHELVEIELAAPEKRTTELTLAILFQLCSCANGRAEFLSHEGSVAVVTERILRVSAAADDRAVFVLSLVFGDERGSAGDAESGSCGEALHGASGRLREIFEGQSDGDSQGAL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0614 378 PANTHER WDSAM1 PROTEIN 3 335 IPR045185 GO:0061630
Aed8g0614 378 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Aed8g0614 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 335 - -
Aed8g0614 378 SUPERFAMILY ARM repeat 111 307 IPR016024 -
Aed8g0614 378 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Aed8g0614 378 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Aed8g0614 378 SUPERFAMILY RING/U-box 3 79 - -
Aed8g0614 378 CDD RING-Ubox_PUB 10 53 IPR045210 -
Aed8g0614 378 Gene3D - 107 336 IPR011989 -
Aed8g0614 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0614 Aed-Chr8 5274087 5276092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0614 2 335 U-box Gene Family AT3G11840 41.710 8.34e-94 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0614 - - gmx:100798446 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0614 8 5274087 5276092 Aed8g0614 8 5274087 5276092 ECH
Aed2g2038 2 24786825 24788084 Aed8g0614 8 5274087 5276092 PCT