Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0586 ATGTCCAGCGCCGCCGGAGCTCCCGACCGCCGCGCCTCGCCGCCTCGGGGGCCTGCCGGCGCCCCATCCCGCCCGCCGCTCAAGCGCCACCTCGCCTTCGTCACCAAACCGCCCTTCGCCCCGCCCGACGAGTACCACAGCTTCTCCAGTACCGACTCCCGCCGCGCCGCCGCCGATGAAGCCGTTGTCGTTAGATCTCCGTACATGAAGCGGAAGAATGGAATGAATGACAGTGAAGGAGAGTCACAAGCACAAAAGTGGAGTAACAGCCCTGGATACACTAATGTCAGTAACATAACGAATAGTCCCTTGACTCCCTTCAAAACTCCTGTGTCTGCAAAAGGGGGAAGGGCACAGAAGGCAAAAGCTTCCAAAGAAGGCAGATCATGTCCTCCAACACCCATCTCAAATGCTGGTTCTCCTTCTCCTCATACTCCTGCTAGCAACTGTCGTTATGACAGTTCATTAGGTCTCTTGACAAAAAAGTTCATCAATTTGGTCAAGCATGCAGAGGATGGTATTCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACGAATGTTTTGGAAGGCATAGGTCTCATTGAAAAGAAGCTGAAGAACAGAATACATTGGAAGGGAATTGAATCTTCTACATCTGGTGAGGTGGATGGTGATATCTCTGTGCTTAAGGCAGAAGTTGAGAAACTTTCTTTGGAGGAGCAGGGATTAGATGATCAAATAAGGGAAATGCAAGAAAGGCTGAGGAATTTGAGTGAAAATGAAAACAGCCAGAAGTACCTTTTTGTGACTGAAGAAGATATTAAGGGCCTACCTTGCTTCCTGAATGAAACTCTAATAGCAATTAAAGCTCCACATGGGACCACACTGGAAGTCCCTGATCCTGAGGAAGCTGTAGACTATCCACAGAGAAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGGATAATGGTGCCGAGGTGCCCATAATCCCAGTTGCTTCCAGTTCTGGGTCAAACAATGAGCAACTAATGACAGAAATAGTCCCCGCAGAATGCAGTGGAAAGGAACTTGAACCTCAAACTCAGCTCTCTTCTCATGCATTCTCTGATCTAACTGCTTCACAAGAGTTTGCTGGTGGCATGATGAAGATTGTCCCTTCAGATGTTGATAATGATGCAGATTATTGGCTTCTATCAGATGCTGACGTTAGTATAACAGATATGTGGAGAACAGATTCCAGTGTTGATTGGAATGGTGTAGACATTCTTCATCCTGATTTCGGAATCATTTCAAGGCCTCAAACCCCATCATCTGGGTTTGCTGAAGTGCCATCAACAGGAGCAAACTCTATTCAGAAGTGA 1419 0.4665 MSSAAGAPDRRASPPRGPAGAPSRPPLKRHLAFVTKPPFAPPDEYHSFSSTDSRRAAADEAVVVRSPYMKRKNGMNDSEGESQAQKWSNSPGYTNVSNITNSPLTPFKTPVSAKGGRAQKAKASKEGRSCPPTPISNAGSPSPHTPASNCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEVDGDISVLKAEVEKLSLEEQGLDDQIREMQERLRNLSENENSQKYLFVTEEDIKGLPCFLNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEDNGAEVPIIPVASSSGSNNEQLMTEIVPAECSGKELEPQTQLSSHAFSDLTASQEFAGGMMKIVPSDVDNDADYWLLSDADVSITDMWRTDSSVDWNGVDILHPDFGIISRPQTPSSGFAEVPSTGANSIQK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0586 472 PANTHER TRANSCRIPTION FACTOR E2F 25 455 IPR015633 GO:0000978|GO:0006357
Aed8g0586 472 PANTHER TRANSCRIPTION FACTOR E2FB 25 455 - -
Aed8g0586 472 MobiDBLite consensus disorder prediction 1 148 - -
Aed8g0586 472 SUPERFAMILY E2F-DP heterodimerization region 229 333 IPR037241 -
Aed8g0586 472 Pfam E2F/DP family winged-helix DNA-binding domain 153 216 IPR003316 GO:0005667|GO:0006355
Aed8g0586 472 SUPERFAMILY "Winged helix" DNA-binding domain 151 214 IPR036390 -
Aed8g0586 472 SMART E2F_TDP_2 151 216 IPR003316 GO:0005667|GO:0006355
Aed8g0586 472 MobiDBLite consensus disorder prediction 452 472 - -
Aed8g0586 472 MobiDBLite consensus disorder prediction 130 148 - -
Aed8g0586 472 Gene3D - 145 218 IPR036388 -
Aed8g0586 472 Coils Coil 229 263 - -
Aed8g0586 472 MobiDBLite consensus disorder prediction 78 108 - -
Aed8g0586 472 CDD E2F_DD 229 333 IPR032198 GO:0046983
Aed8g0586 472 Gene3D - 223 333 - -
Aed8g0586 472 Pfam E2F transcription factor CC-MB domain 232 332 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0586 Aed-Chr8 5018652 5024675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0586 22 469 E2F-DP Transcription Factor Family AT2G36010 54.717 2.11e-159 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aed8g0586 E2F_CC-MB 2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0586 K06620 - gmx:100811762 841.262