Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0574 ATGGGGCGTGTCCGCACGAAGACCGTGAAGAAGTCATCGCGTCAAGTAATCGAGAGGTACTACTCCCGCATGACGCTGGACTTCCACACAAACAAGAAGGCGCTTCAGGAGGTGGCGATCATCCCCTCCAAGAGGCTCCGCAACAAGATCGCGGGGTTCACCACCCACCTCATGAAGCGCATCCAAAAGGGTCCCGTCAGGGGAATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTTGTTCCCGACGTTTCTGCTATTTCCACTGATCTCATCCAGGTTGACAAGGAGACACTCGACATGCTTGCTGCTCTCGGGATGTCCGACGTTCCTGGGGTTGTTCAGGTGGATCCTGTGGCTGTTGTCCCGGTGACGTTCGGCGCCGGCCGACCTCCGAGGAGATCTATCCAAAATGCAACACTTGTGCAGACCAGAGTGTGGGTGATGGTTGGCCCTTGTTGTCTTTATTTCCGTGGCGAAGGAGAAAAGTTTGAGTGGAAGAAGCTGCAATATTATCATAGTGAAATTGAAGCCAAGTCTACCACCTCCCAGAAACTGAAATACATATCAGTATCACAAAGGAAAGAATCTGTGAAAGAAAAGATCATTCTCTCTCAAGAGAGAAATATTCAGAGACTTCATGAGCATGTTCGGAGTCTTAGTGAACAATTGGTACAATGTAAGGCTGGTTCTGACTCTTCTAAGGATTCTAAAATCACCACAAACCCTTTGGCAGAATTTCTATCTGACTTTGGGGACTAG 774 0.5013 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKALQEVAIIPSKRLRNKIAGFTTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAISTDLIQVDKETLDMLAALGMSDVPGVVQVDPVAVVPVTFGAGRPPRRSIQNATLVQTRVWVMVGPCCLYFRGEGEKFEWKKLQYYHSEIEAKSTTSQKLKYISVSQRKESVKEKIILSQERNIQRLHEHVRSLSEQLVQCKAGSDSSKDSKITTNPLAEFLSDFGD 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0574 257 PANTHER 40S RIBOSOMAL PROTEIN S17 1 134 - -
Aed8g0574 257 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Aed8g0574 257 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Aed8g0574 257 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Aed8g0574 257 Coils Coil 207 227 - -
Aed8g0574 257 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
Aed8g0574 257 PANTHER 40S RIBOSOMAL PROTEIN S17 1 134 IPR001210 GO:0003735|GO:0005840|GO:0006412
Aed8g0574 257 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0574 Aed-Chr8 4936128 4939518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0574 1 138 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 82.857 6.47e-80 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0574 K02962 - gmx:100819067 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0574 8 4936128 4939518 Aed8g0574 8 4936128 4939518 ECH