Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0572 ATGTCCATAAATCACTACTCCATGGAACTTCCAGAACCAACACTGTGGTGGCCACAGCAACAACAACAACAGCAACCAATCTTAATGGAACCAATCCAAAGCACAAACAACCCACTCCGGCTTAATATCAAGAGGAACGATGGTGATGCTGGTGGTGATGACAACGATGACGATAACTATAAGGAATATGAAAAAACGACGACAACAACTACAAATGATCAGCAGGAAGAAGAGACAAATGGTGATAAAGAACCGATGTTTGAGAAGCCGCTGACCCCGAGCGACGTGGGGAAGCTGAACCGCCTCGTAATCCCGAAGCAGCACGCGGAGAAGTACTTTCCACTGAGTGGTGGTGGTGGTGGTGAGTCGGGCGGTGGCGGCGGCGAGTGCAAGGGGCTGCTACTGAGTTTCGAGGACGAGTCCGGGAAGTGCTGGCGGTTCCGCTACTCGTACTGGAACAGCAGCCAGAGCTACGTGCTGACCAAGGGGTGGAGCCGCTACGTCAAGGACAAGCGCCTCGACGCCGGCGACGTCGTTCTGTTCGAGCGCCACCGCGCCGACGCGCAGCGCCTCTTCATCGGATGGAGGCGCAGGCGGCTGAGCGGCGACACACTGCTGGCGCACGTTAGCAGCAGGGCGCACGGGAAGAGTGGCGGCGCCGCCGGTGATGGGATCACTACTAAGAATGAGGGTGGTGGTGGTGGGTGGACCAGAGGGTTCTATTCTGCGCATCCTTATCCTACGCATCATCAGCAGCCCTTGCCATACCAACAACAAAATGACTGTCTTCATGCAGGTAGAGGGTCCCAGCAGCAAGGTCAGAATCAAAGGACGAAAGCAGTGGGAAACAACAGTTCCAGTTCAAGTTCGAGTTCAAGGGTACTTAGGCTGTTTGGGGTCAACATGGAATGCCAACCAGAACAACATGATCATAACAATAACAACAATTCTGGACCCTCCACACCCCAATGCTCTTACAATAGTAATAGTAACAATAACAATAATAACAACAACATGCCATCAACACAGGGCACAGATCATTCCCTTCACAACAATTTCTACCAACAACCTTCTAATTCCAATCACATGATGGTACGTCACCAACCATACTACTACTAG 1119 0.5192 MSINHYSMELPEPTLWWPQQQQQQQPILMEPIQSTNNPLRLNIKRNDGDAGGDDNDDDNYKEYEKTTTTTTNDQQEEETNGDKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGGGGESGGGGGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRADAQRLFIGWRRRRLSGDTLLAHVSSRAHGKSGGAAGDGITTKNEGGGGGWTRGFYSAHPYPTHHQQPLPYQQQNDCLHAGRGSQQQGQNQRTKAVGNNSSSSSSSSRVLRLFGVNMECQPEQHDHNNNNNSGPSTPQCSYNSNSNNNNNNNNMPSTQGTDHSLHNNFYQQPSNSNHMMVRHQPYYY 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0572 372 Gene3D - 75 204 IPR015300 -
Aed8g0572 372 PANTHER - 1 353 - -
Aed8g0572 372 SMART B3_2 87 199 IPR003340 GO:0003677
Aed8g0572 372 MobiDBLite consensus disorder prediction 265 292 - -
Aed8g0572 372 MobiDBLite consensus disorder prediction 305 372 - -
Aed8g0572 372 MobiDBLite consensus disorder prediction 306 365 - -
Aed8g0572 372 ProSiteProfiles B3 DNA-binding domain profile. 87 199 IPR003340 GO:0003677
Aed8g0572 372 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 353 IPR044800 GO:0003700
Aed8g0572 372 Pfam B3 DNA binding domain 87 198 IPR003340 GO:0003677
Aed8g0572 372 CDD B3_DNA 85 189 IPR003340 GO:0003677
Aed8g0572 372 MobiDBLite consensus disorder prediction 30 98 - -
Aed8g0572 372 SUPERFAMILY DNA-binding pseudobarrel domain 82 197 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0572 Aed-Chr8 4898746 4902498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0572 83 310 RAV Transcription Factor Family AT5G06250 49.782 3.76e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed8g0572 B3 1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0572 - - gmx:100795470 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0572 8 4898746 4902498 Aed8g0572 8 4898746 4902498 ECH
Aed2g2010 2 24527312 24530084 Aed8g0572 8 4898746 4902498 PCT