Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0555 ATGTCCCAGACAATTCACGACCAATTCGAATCCCATTCCAATGGCAATGGTAGCAACGCCAACGTCACTATCATCAATTTTTCTAAACCCACCCCCACCTCCACCCCCTTTCCTCCACTTCCACTCCCCAGCCGCCACAATCCGCCAAAACCACTCTCCCTCCGAATCCGCGCCAAAACCAACCACACCCTCCAATTCCTCAAACCCTACCTCCTCTCCCAACACAAACCGATCCTCTGCGGTTGGCTCTGCAGCGCCGTCTCCGTCTACTCCCTCTCCGCTATCCTCTCCAAACTCCCCAAACTCCCCACCCTCGGCGCTGCCTCCGACGCCGCCTCCCTCGCTGCGCTCCTCGTCGTGCGCCTCGCCGCCGGGTACGCGCAGCACGCGCTTCTATGGGAGGCCGCGCTTGGTGCCGTCTACAACCTCCGCCTCCACGTCTTCGACCGCGTCCTCCATCGCGAGCTAGCGTACTTCGAAGGGAGCCGCGGCGCTTCCGCCGGCGATGTCGCGTACCGAATCACCGCCGAAGCCTCCGACCTCGCGACCATAGTACCAAGTACTCTGCAGTTGTCGGCAATGATGATGCAGATGTTAGTCATAAGTCCCACCCTTTCTTTGGTTTCAGCCATGATTATTCCTTGCATGATGCTAGTTGTTACCTTTCTTGGTCAAGAACTTCGCAAGATATCCAAAGAGGCACATGTTAGCATTGCTGCTCTCTCAGCTTATCTAAATGAGGTGCTTCCTGCAATTCTCTTTGTGAAAGCAAACAATGCAGAGTCGTGTGAGAATACCAGGTTTAAGAGACTGGCTCTGATGGACTATACTGCAAGGCTGAAGAAAAAAAAGATGAAAGCATTGATTCCTCAGATTGTACAAGCTATTTATTTTGGAGTCCTTTCCATACTTTGCGTGGGTTCGCTGATGATTTCAAGAGGTTCATTTGATTGCTATAGCTTGGTTTCATTTGTGACATCGTTGCTTTTCTTGATTCAGCCAATCCAGGATGTAGGAAAAGCTTACAATGAATGGAGGCAGGGAGAACCAGCCGCTGAACGCTTGCTTGCCATGACCAGGTTCAAAAATAAGGTTGTTGAGAAACCAGATGCTGCTGATTTGGACCATGTTACAGGGGACCTGAAATTCTGTGATGTCTCCTTTGGGTATAACGATGACATGCCACTTGTTTTAAATGGATTAAATCTTCACATTAAAACTGGAGAGATAGTTGCTATTGTGGGTCCTTCTGGTGGAGGGAAAACAACACTTGTAAAACTGTTGCTTCGGCTTTATGATCCTATATCTGGTGAGTCATTTGAAATAAATCTCGGTTGTATACTGATTGATAACCATAACATCCAAAACCTTCGGTTGGAAAGTTTGAGAAGACATGTTAGTGTTGTTTCTCAAGATATAACACTTTTTTCAGGTACAGTTGCGGAAAACATTGGTTATAGGGATCTGACAACAAAAATTGACATGGAGGGGGTGAAGCATGCAGCTCAAACTACTCATGCATATGAGTTTATTGAAAAACTTCCAGAAGGATACAAAACCAATATTGGACCGAGGGGCTCAACTTTAAGTGGAGGCCAGAGACAAAGGCTGGCTATTGCAAGGGCTTTCTATCAAAATTCTTCTATATTAATTCTGGATGAGGCAACTTCGTCCTTGGATAGTAAATCTGAGTTATTAGTGAGACAAGCTGTAGAGCGTTTGATGCAAAATCGTACAGTGCTTGTGATTTCCCATCGATTGGAAACAGTAATGATGGCTAAACGAGTATTTCTTTTGGATGATGGGAAGCTAAAAGAGCTGCCTCGGTCAACCATGTTGGAAGGTTACAAGGATTCATTGCTATCATCTGGGCTTGTTATTTGA 1884 0.4687 MSQTIHDQFESHSNGNGSNANVTIINFSKPTPTSTPFPPLPLPSRHNPPKPLSLRIRAKTNHTLQFLKPYLLSQHKPILCGWLCSAVSVYSLSAILSKLPKLPTLGAASDAASLAALLVVRLAAGYAQHALLWEAALGAVYNLRLHVFDRVLHRELAYFEGSRGASAGDVAYRITAEASDLATIVPSTLQLSAMMMQMLVISPTLSLVSAMIIPCMMLVVTFLGQELRKISKEAHVSIAALSAYLNEVLPAILFVKANNAESCENTRFKRLALMDYTARLKKKKMKALIPQIVQAIYFGVLSILCVGSLMISRGSFDCYSLVSFVTSLLFLIQPIQDVGKAYNEWRQGEPAAERLLAMTRFKNKVVEKPDAADLDHVTGDLKFCDVSFGYNDDMPLVLNGLNLHIKTGEIVAIVGPSGGGKTTLVKLLLRLYDPISGESFEINLGCILIDNHNIQNLRLESLRRHVSVVSQDITLFSGTVAENIGYRDLTTKIDMEGVKHAAQTTHAYEFIEKLPEGYKTNIGPRGSTLSGGQRQRLAIARAFYQNSSILILDEATSSLDSKSELLVRQAVERLMQNRTVLVISHRLETVMMAKRVFLLDDGKLKELPRSTMLEGYKDSLLSSGLVI 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0555 627 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 83 347 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed8g0555 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 607 IPR027417 -
Aed8g0555 627 MobiDBLite consensus disorder prediction 1 25 - -
Aed8g0555 627 Pfam ABC transporter transmembrane region 113 334 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aed8g0555 627 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 381 626 IPR003439 GO:0005524
Aed8g0555 627 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 56 617 IPR039421 -
Aed8g0555 627 ProSitePatterns ABC transporters family signature. 529 543 IPR017871 GO:0005524
Aed8g0555 627 SMART AAA_5 407 603 IPR003593 -
Aed8g0555 627 Pfam ABC transporter 398 557 IPR003439 GO:0005524
Aed8g0555 627 CDD ABC_6TM_exporters 119 355 - -
Aed8g0555 627 Gene3D ABC transporter type 1, transmembrane domain 64 360 IPR036640 GO:0005524|GO:0016021
Aed8g0555 627 PANTHER ABC TRANSPORTER B FAMILY MEMBER 29, CHLOROPLASTIC 56 617 - -
Aed8g0555 627 Gene3D - 372 622 IPR027417 -
Aed8g0555 627 SUPERFAMILY ABC transporter transmembrane region 67 359 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0555 Aed-Chr8 4760937 4766245 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0555 373 624 Calmodulin-binding Proteins AT2G36910 42.578 1.14e-51 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0555 K02021 - gmx:100788075 968.763