Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0538 TTTTGTCCCTCTGGTTTTAAAATTGTTTTACTCACAAGTTCCGTTCTTTCTCAGAAACCAGTTTCTGCTTCAAGGCAAAGTTTGTTTTTTCTCTATCAACAAGGAAAATGTCAGGGTATGATAGCTTTGCTTTCTGAAGAGGATGTTGTTGCAGCTGAGCCTGCTGCTGTTGTTGCTGCCGCCGCCACCATTCCAGGCGAGCCAATGGATATCATGACTGCCTTACAGCTTGTGCTCAGAAAATCTCTGGCATATGGTGGTCTTGCACGAGGCCTTCATGAAGGTGCAAAAGTTATTGAGAAACATGCTGCGCAACTCTGTGTTCTAGCAGAAGACTGTGACCAGCCTGACTATGTTAAACTTGTTAAGGCTCTTTGTGCAGAGCATAGTGTTAGCCTGCTGACAGTTCCAAGTGCAAAGACCCTTGGAGAATGGGCTGGTTTATGCAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTTACTGGTTGCTCCTGTGTGGTTGTGAAGGATTTCGGTGAGGAGCATGAAGCCTATAACGTTGTTCTGCAGCATGTGAAATCTCAATGA 567 0.4497 FCPSGFKIVLLTSSVLSQKPVSASRQSLFFLYQQGKCQGMIALLSEEDVVAAEPAAVVAAAATIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHSVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSQ 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0538 188 PANTHER 40S RIBOSOMAL PROTEIN S12 45 188 - -
Aed8g0538 188 ProSitePatterns Ribosomal protein S12e signature. 74 92 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aed8g0538 188 PRINTS Ribosomal protein S12E family signature 78 91 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aed8g0538 188 PRINTS Ribosomal protein S12E family signature 92 108 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aed8g0538 188 PRINTS Ribosomal protein S12E family signature 133 154 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aed8g0538 188 PRINTS Ribosomal protein S12E family signature 158 171 IPR000530 GO:0003735|GO:0005840|GO:0006412
Aed8g0538 188 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 74 167 IPR004038 -
Aed8g0538 188 SUPERFAMILY L30e-like 68 186 IPR029064 -
Aed8g0538 188 Gene3D - 56 188 IPR029064 -
Aed8g0538 188 PANTHER 40S RIBOSOMAL PROTEIN S12 45 188 IPR000530 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0538 Aed-Chr8 4651614 4653781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0538 64 188 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 75.200 1.28e-66 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0538 K02951 - gmx:100786733 258.455