Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0515 ATGCAGAAGCGAAAGGCGGGGAGGAAAAAGTTCCACGAGACACGTCATCAGGTGTACAAAGGAGTGAGGCAGAGGAACGGGAAGTGGGTGTGCGAGCTGCGACAACCTAGTAACAAAAACGCGCGCGTGTGGCTCGGAACATTCGCGCACCCCGACATGGCTGCTATAGCGTACGATGTTGCTGCCTTGGCTTTCAAGGGCGACGCCGCTTCCTTAAACTTCCCACACTCCGCTGCCTCGTTGCCGCGTCTTAACGCCCTGACTTGTTCCGTCAGGGCGATACAATCTGCGGCGATGCAAGCGGCGGAGAAGCATTTTTCTCGTGCAGAGTCCCAGCTCCAAAGGGAGGAGGACTTAGAGGGATCAGGTTCTTCTTTTTCTGATCCCTCTGAAAGCTCCTCTTTGGAAGAAGATAATTCTTCTGAATCTTCGTCTGATGGAGCTTCTGTGAAGTTCTGTTGGGATGAAGAGGAACTCTTTAACATGCCGGAGTTGCTGAACAGCATGGCGGAAGCGTTGATTATCACACCGCCGGCGTTGGAAAGAGGGTTCAATTGGGTTGGTGGGGAAACTACTATGGATTTGACTCTGTGGTGA 597 0.5276 MQKRKAGRKKFHETRHQVYKGVRQRNGKWVCELRQPSNKNARVWLGTFAHPDMAAIAYDVAALAFKGDAASLNFPHSAASLPRLNALTCSVRAIQSAAMQAAEKHFSRAESQLQREEDLEGSGSSFSDPSESSSLEEDNSSESSSDGASVKFCWDEEELFNMPELLNSMAEALIITPPALERGFNWVGGETTMDLTLW 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0515 198 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Aed8g0515 198 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 7 198 - -
Aed8g0515 198 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Aed8g0515 198 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Aed8g0515 198 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Aed8g0515 198 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Aed8g0515 198 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Aed8g0515 198 MobiDBLite consensus disorder prediction 105 147 - -
Aed8g0515 198 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Aed8g0515 198 Coils Coil 99 119 - -
Aed8g0515 198 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 198 - -
Aed8g0515 198 MobiDBLite consensus disorder prediction 118 147 - -
Aed8g0515 198 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0515 Aed-Chr8 4419112 4419708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0515 3 198 AP2-EREBP Transcription Factor Family AT5G51990 42.640 7.55e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed8g0515 AP2 1.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0515 - - gmx:100778541 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0515 8 4419112 4419708 Aed8g0515 8 4419112 4419708 ECH
Aed8g0515 8 4419112 4419708 Aed2g1948 2 24051898 24052470 PCT