Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0514 ATGTATTCCGGCAATGCAACCAGCAGCAGCAGCAGCGGCTCTTCCGGATCCGGTAAGTACCGCGGCGTCAGGCGTCGGAGCAGCGGGAAATGGGTGTCCGAGATTCGCGAGCCCAAGAAGCCTAACCGTATTTGGCTAGGCACGTTCCCCACCCCGGAAATGGCCGCCGTGGCATATGACGTGGCCGCGCTGGCTCTCAAGGGTAAGGATGCTGAGCTCAACTTTCCAAACTCGGCTTCCTCGCTTCCCGTGCCGGATACGCTCTCGGCGCGTGACATTCAGGTGGCGGCGGCGGCTGCAGCGGCTGCTGCCGGAGCAGCGAATGATGCTATGAGAACACAAACTGTGAATTATAGTTTCTCACCAGGGGAACAAGAGAACCAAGCAGGGACGATGAGTAACCATAACCAGTTTGTGGATGAGGATATGATATTTGACATGCCTAATGTTCTGGTCAACATGGCTGAGGGAATGCTGCTTAGTCCTCCTCCTTTTGACATTGGTTTTGAACCGAATAGCCCAGAAAACACCGAACATGAGACAAGCCTGTGGAATTTCCCTTAA 564 0.5461 MYSGNATSSSSSGSSGSGKYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGKDAELNFPNSASSLPVPDTLSARDIQVAAAAAAAAAGAANDAMRTQTVNYSFSPGEQENQAGTMSNHNQFVDEDMIFDMPNVLVNMAEGMLLSPPPFDIGFEPNSPENTEHETSLWNFP 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0514 187 SUPERFAMILY DNA-binding domain 19 78 IPR016177 GO:0003677
Aed8g0514 187 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Aed8g0514 187 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Aed8g0514 187 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Aed8g0514 187 MobiDBLite consensus disorder prediction 1 37 - -
Aed8g0514 187 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Aed8g0514 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 187 - -
Aed8g0514 187 PRINTS Ethylene responsive element binding protein signature 58 78 IPR001471 GO:0003700|GO:0006355
Aed8g0514 187 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Aed8g0514 187 MobiDBLite consensus disorder prediction 1 18 - -
Aed8g0514 187 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
Aed8g0514 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 7 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0514 Aed-Chr8 4397478 4398296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0514 20 187 AP2-EREBP Transcription Factor Family AT2G36450 61.850 7.19e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed8g0514 AP2 3.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0514 - - gmx:100811614 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0514 8 4397478 4398296 Aed8g0514 8 4397478 4398296 ECH
Aed2g1948 2 24051898 24052470 Aed8g0514 8 4397478 4398296 PCT