Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0493 ATGGAGTGGAATGGTAGCACAAGTAGTAGACGCTATGTTGTTCCACGATCAGACTCCTCTTCCTTGAGCTTCCTTTACAACTACAACTACACACCATATCCAGGAATGGAAGTGAAGCAACAAGCACTGGTGGCAGAGACAAGTTCTTCATCCATGGAGAAAATGAACAGCCAGGTGGAGAAGAAGAAGAGATTAACAAGTGAGCAGTTGGAGTCTTTGGAGAGTAGTTTCCAGAAGGAGATAAAGTTGGACCCTGATAGGAAGACGAAGCTTTCGAAGGAGTTAGGGCTTCAACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTGCAAGGTGGAAGAACAAGCAACTTGAACACTTGTACGATTCTCTTAAACAGGAGTTTGATGTCATTTCCAAGGAAAAACATCAGCTTCAGGAAGAGGTGGTGAAGTTGAAGACTATGCTGAGAGAGCAAGCTTCTAGAACTCAAGTGTCAACAACAGGATACACTACTGCAGAAATCTCTGGGGAAGAAACAGTAGAAAGCACGTCAGAGGCAAAACTGCGTTGCTCCAAACGGGGAACACTGCACCAGCAGCAGCAGCAGCAGAATAACAACAACATTGGAGAGGGAAACTGTTCCTTCACTTTGGAAGATTACAACAACACTGTTCCAGTAGTACTACCCTATTGGCCTGCAGGGGTAGTCCCTAATTATTATCATCATCCCTGA 717 0.4491 MEWNGSTSSRRYVVPRSDSSSLSFLYNYNYTPYPGMEVKQQALVAETSSSSMEKMNSQVEKKKRLTSEQLESLESSFQKEIKLDPDRKTKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKHQLQEEVVKLKTMLREQASRTQVSTTGYTTAEISGEETVESTSEAKLRCSKRGTLHQQQQQQNNNNIGEGNCSFTLEDYNNTVPVVLPYWPAGVVPNYYHHP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0493 238 Gene3D - 52 124 - -
Aed8g0493 238 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Aed8g0493 238 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Aed8g0493 238 SUPERFAMILY Homeodomain-like 48 118 IPR009057 -
Aed8g0493 238 Coils Coil 56 76 - -
Aed8g0493 238 SMART HOX_1 59 120 IPR001356 GO:0003677
Aed8g0493 238 Coils Coil 108 156 - -
Aed8g0493 238 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 221 - -
Aed8g0493 238 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 221 IPR045224 GO:0003700
Aed8g0493 238 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Aed8g0493 238 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Aed8g0493 238 Pfam Homeobox associated leucine zipper 116 150 IPR003106 GO:0006355|GO:0043565
Aed8g0493 238 CDD homeodomain 61 117 IPR001356 GO:0003677
Aed8g0493 238 Pfam Homeodomain 61 115 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0493 Aed-Chr8 4187968 4189770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0493 9 155 Homeobox Transcription Factor Family AT2G36610 50.877 9.96e-47 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed8g0493 Homeodomain 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0493 - - gmx:100778007 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0493 8 4187968 4189770 Aed8g0493 8 4187968 4189770 ECH
Aed8g0493 8 4187968 4189770 Aed2g1925 2 23823435 23824840 PCT