Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0484 ATGGCGGTTCCAGCGACGCTTGCCGCCGCTCTGGCATCGCTTTACGTCGGAGACCTCCACCCCGACGTCGATTGCCTCCAACTCGGCCTGGCTTTCGCGGAGTTCAAGAGCCTCGTCTCCATTCGCGTCTGCAGAGACCGCATCACGATGAACTCGCTCGGTTACGGTTACGTCAACTTCAGCTCTCAACATGACGTAGCAATTCGTGCAATCAAGTTGAAAAACAATTCTTATCTGAATGGAAAAATGATAAGGGTCATGTGGTCACATCGTGATCCTAATGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTAGCTGGATCAATAGACAGTGCGGGGCTATATGATTTATTTCAAAAATATGGGAATATTTTGTCCAGCAAAGTTGTCATGTCTGAGGATGGGAAGAGCAAAGGATATGTTGGCAAGTTTGTCAGAAAAGGTGACCGCATTTTGCCTGGCCACGATGCCAAATATACAAATTTGTACATTAAAAACTTGGACTCAGATATTACAGAAGCACTTCTTCAGGAAAAGTTCTCTTCTTTTGGAAAAATTGTTAGCTTGGCTATTGCAAAGGATGAGAATGGGCTATCAAAGGGTTTTGCATTTGTGAACTATGAGAATACAGATGATGCTAGAAAGGCTATGGAAGCAATGAATGGATTACAATTTGGTAGTTCAAAGTATCTGTATGTAGCTAGGGCACAAAAGAAGGCTGAACGTGAGCAAATCTTGCTCCGTCAATTTGAGGCGAAACGCAAGGAACAGATATTGAAATATCAGTTGATGCTATATGCCACAGGATGCATGTTCCACCGTAAACCTCTGTATATTGCTATTGCTCAGAGGAAAGAGGATAGGAAGACACAGTTGACGCTCCACTATGCACCACGACAAGCAGGATTGGATGCAACTTCAACTCCAGTTACCCATGGTGGATTTTCACCTTACCTCTATCCTGGTTTTGCTTCACAGGTGTATCAATCTGGGTTGTTGTATCAACCTCTGGGATTGAGGTCAGGATGGAGGGCTAATGACTTTGTGCCTCCCAGTAGATCATTTCAACAATCACAGGTTCCTAACTTTACTAGGCAAAACAAGGGCAGGATGAATGTGAATTCATTGGGAAAAGGTCACTCTAGTGTATATATCCCGCAATTACCACCCTATTATCAACCAGTAGAGTACATGGCAGGTTTGCTTCTTTTTCTTTCCCCTTTTTTTTTCCTTATGTACTGA 1251 0.4349 MAVPATLAAALASLYVGDLHPDVDCLQLGLAFAEFKSLVSIRVCRDRITMNSLGYGYVNFSSQHDVAIRAIKLKNNSYLNGKMIRVMWSHRDPNARKSGRGNVFVKNLAGSIDSAGLYDLFQKYGNILSSKVVMSEDGKSKGYVGKFVRKGDRILPGHDAKYTNLYIKNLDSDITEALLQEKFSSFGKIVSLAIAKDENGLSKGFAFVNYENTDDARKAMEAMNGLQFGSSKYLYVARAQKKAEREQILLRQFEAKRKEQILKYQLMLYATGCMFHRKPLYIAIAQRKEDRKTQLTLHYAPRQAGLDATSTPVTHGGFSPYLYPGFASQVYQSGLLYQPLGLRSGWRANDFVPPSRSFQQSQVPNFTRQNKGRMNVNSLGKGHSSVYIPQLPPYYQPVEYMAGLLLFLSPFFFLMY 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0484 416 PANTHER POLYADENYLATE-BINDING PROTEIN 5 143 - -
Aed8g0484 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 231 IPR000504 GO:0003723
Aed8g0484 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Aed8g0484 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 143 IPR000504 GO:0003723
Aed8g0484 416 Gene3D - 95 147 IPR012677 -
Aed8g0484 416 PANTHER POLYADENYLATE-BINDING PROTEIN 271 396 - -
Aed8g0484 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 91 IPR000504 GO:0003723
Aed8g0484 416 Coils Coil 236 256 - -
Aed8g0484 416 PANTHER RNA BINDING PROTEIN 5 143 - -
Aed8g0484 416 SUPERFAMILY RNA-binding domain, RBD 155 248 IPR035979 GO:0003676
Aed8g0484 416 Gene3D - 8 94 IPR012677 -
Aed8g0484 416 Gene3D - 148 248 IPR012677 -
Aed8g0484 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 241 IPR000504 GO:0003723
Aed8g0484 416 PANTHER RNA BINDING PROTEIN 271 396 - -
Aed8g0484 416 PANTHER RNA BINDING PROTEIN 155 265 - -
Aed8g0484 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 143 IPR000504 GO:0003723
Aed8g0484 416 PANTHER POLYADENYLATE-BINDING PROTEIN 155 265 - -
Aed8g0484 416 SMART rrm1_1 13 87 IPR000504 GO:0003723
Aed8g0484 416 SMART rrm1_1 102 163 IPR000504 GO:0003723
Aed8g0484 416 SMART rrm1_1 164 237 IPR000504 GO:0003723
Aed8g0484 416 SUPERFAMILY RNA-binding domain, RBD 13 143 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0484 Aed-Chr8 4107154 4111100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0484 12 391 Eukaryotic Initiation Factors Gene Family AT2G36660 43.038 9.15e-107 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0484 K13126 - gmx:100807057 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1916 2 23758803 23763442 Aed8g0484 8 4107154 4111100 PCT