Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0459 ATGCAAGTCCAAGAGGAAGAAGTAGTTTTGGTTTCCAACAAGGATCATCACATGAACCAAATGATGATGATCAAGGGCAAGCGAACCAAGCGTCAAAGGGCACCATCCCCTCTTAGGCTAGCCATGTCTAAGCCTAATTATTCAACCTCAAGTAGCATCAACAATTCCATTGATAGTGCCACATCCAACACATTAATTGAATTGAGAGAAGACGAAGACATGGCCAATTGTCTTATTCTTCTGGCTCAGGGTAGATGTCACGTGTCAGCACCAACGTCGTCGTCGGTGCATCACAACAGCGATGACGACAGCCATCATAAGTCAACAACAAGCCTATACCTTTACCAGTGCAAGACTTGCAACAGATGCTTCCCTTCATTCCAAGCACTTGGGGGACACAGAGCCAGTCACAAGAAGCCTAAGCAAAACGGCACCTTTTCAGAAGCAGCAGTTACTACTTTCATTCAAGAGAATCATCATCATCATCTTAGTTATGACCCCACCACAAGCACCACCCTCTCTTTGAAAATACCAAATGGGGTTAATAATTTGTGTAGCACCACAACAACAACAACAACAACAAAAGCTAACAAGGTTCACGAGTGTTCTATCTGTGGTGCTGAATTCTCTTCTGGACAAGCCTTGGGGGGGCACATGAGGCGTCACAGAACTCTTGTGAACGCTTCTATGAGTGGTGGTGGTGGTAGCCACGAATTGCAAGAAGCAAAGAAACCCTTGAAGTTGGACTTGAATCTTCCAGCACCAGAGGATGATCATAGAGAATCATCCAAGTTTTCGTTTCAGCAAAGAGAAAACGTTATTGTCTTCTCTAAGTCTTCTTTGGTCGATTGCCATTATTAA 861 0.4413 MQVQEEEVVLVSNKDHHMNQMMMIKGKRTKRQRAPSPLRLAMSKPNYSTSSSINNSIDSATSNTLIELREDEDMANCLILLAQGRCHVSAPTSSSVHHNSDDDSHHKSTTSLYLYQCKTCNRCFPSFQALGGHRASHKKPKQNGTFSEAAVTTFIQENHHHHLSYDPTTSTTLSLKIPNGVNNLCSTTTTTTTTKANKVHECSICGAEFSSGQALGGHMRRHRTLVNASMSGGGGSHELQEAKKPLKLDLNLPAPEDDHRESSKFSFQQRENVIVFSKSSLVDCHY 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0459 286 SUPERFAMILY beta-beta-alpha zinc fingers 114 141 IPR036236 -
Aed8g0459 286 Pfam C2H2-type zinc finger 115 140 - -
Aed8g0459 286 Pfam C2H2-type zinc finger 199 223 - -
Aed8g0459 286 SMART c2h2final6 115 137 IPR013087 -
Aed8g0459 286 SMART c2h2final6 200 222 IPR013087 -
Aed8g0459 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Aed8g0459 286 ProSitePatterns Zinc finger C2H2 type domain signature. 202 222 IPR013087 -
Aed8g0459 286 PANTHER ZINC FINGER PROTEIN ZAT5 20 285 - -
Aed8g0459 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 222 IPR013087 -
Aed8g0459 286 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Aed8g0459 286 Gene3D Classic Zinc Finger 113 222 - -
Aed8g0459 286 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 20 285 - -
Aed8g0459 286 SUPERFAMILY beta-beta-alpha zinc fingers 197 223 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0459 Aed-Chr8 3879839 3880699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0459 19 286 C2H2 Transcription Factor Family AT2G28200 40.523 7.11e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed8g0459 zf-C2H2_6 1.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0459 - - gmx:100785596 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0459 8 3879839 3880699 Aed1g2622 1 21830526 21831593 ECH
Aed8g0459 8 3879839 3880699 Aed8g0459 8 3879839 3880699 ECH
Aed8g0459 8 3879839 3880699 Aed1g1083 1 10699725 10700672 ECH
Aed2g1895 2 23578433 23579314 Aed8g0459 8 3879839 3880699 PCT