Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aed8g0459 | ATGCAAGTCCAAGAGGAAGAAGTAGTTTTGGTTTCCAACAAGGATCATCACATGAACCAAATGATGATGATCAAGGGCAAGCGAACCAAGCGTCAAAGGGCACCATCCCCTCTTAGGCTAGCCATGTCTAAGCCTAATTATTCAACCTCAAGTAGCATCAACAATTCCATTGATAGTGCCACATCCAACACATTAATTGAATTGAGAGAAGACGAAGACATGGCCAATTGTCTTATTCTTCTGGCTCAGGGTAGATGTCACGTGTCAGCACCAACGTCGTCGTCGGTGCATCACAACAGCGATGACGACAGCCATCATAAGTCAACAACAAGCCTATACCTTTACCAGTGCAAGACTTGCAACAGATGCTTCCCTTCATTCCAAGCACTTGGGGGACACAGAGCCAGTCACAAGAAGCCTAAGCAAAACGGCACCTTTTCAGAAGCAGCAGTTACTACTTTCATTCAAGAGAATCATCATCATCATCTTAGTTATGACCCCACCACAAGCACCACCCTCTCTTTGAAAATACCAAATGGGGTTAATAATTTGTGTAGCACCACAACAACAACAACAACAACAAAAGCTAACAAGGTTCACGAGTGTTCTATCTGTGGTGCTGAATTCTCTTCTGGACAAGCCTTGGGGGGGCACATGAGGCGTCACAGAACTCTTGTGAACGCTTCTATGAGTGGTGGTGGTGGTAGCCACGAATTGCAAGAAGCAAAGAAACCCTTGAAGTTGGACTTGAATCTTCCAGCACCAGAGGATGATCATAGAGAATCATCCAAGTTTTCGTTTCAGCAAAGAGAAAACGTTATTGTCTTCTCTAAGTCTTCTTTGGTCGATTGCCATTATTAA | 861 | 0.4413 | MQVQEEEVVLVSNKDHHMNQMMMIKGKRTKRQRAPSPLRLAMSKPNYSTSSSINNSIDSATSNTLIELREDEDMANCLILLAQGRCHVSAPTSSSVHHNSDDDSHHKSTTSLYLYQCKTCNRCFPSFQALGGHRASHKKPKQNGTFSEAAVTTFIQENHHHHLSYDPTTSTTLSLKIPNGVNNLCSTTTTTTTTKANKVHECSICGAEFSSGQALGGHMRRHRTLVNASMSGGGGSHELQEAKKPLKLDLNLPAPEDDHRESSKFSFQQRENVIVFSKSSLVDCHY | 286 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aed8g0459 | 286 | SUPERFAMILY | beta-beta-alpha zinc fingers | 114 | 141 | IPR036236 | - | |
Aed8g0459 | 286 | Pfam | C2H2-type zinc finger | 115 | 140 | - | - | |
Aed8g0459 | 286 | Pfam | C2H2-type zinc finger | 199 | 223 | - | - | |
Aed8g0459 | 286 | SMART | c2h2final6 | 115 | 137 | IPR013087 | - | |
Aed8g0459 | 286 | SMART | c2h2final6 | 200 | 222 | IPR013087 | - | |
Aed8g0459 | 286 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 115 | 142 | IPR013087 | - | |
Aed8g0459 | 286 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 202 | 222 | IPR013087 | - | |
Aed8g0459 | 286 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 20 | 285 | - | - | |
Aed8g0459 | 286 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 200 | 222 | IPR013087 | - | |
Aed8g0459 | 286 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 117 | 137 | IPR013087 | - | |
Aed8g0459 | 286 | Gene3D | Classic Zinc Finger | 113 | 222 | - | - | |
Aed8g0459 | 286 | PANTHER | ZINC FINGER, C2H2-LIKE PROTEIN-RELATED | 20 | 285 | - | - | |
Aed8g0459 | 286 | SUPERFAMILY | beta-beta-alpha zinc fingers | 197 | 223 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aed8g0459 | Aed-Chr8 | 3879839 | 3880699 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aed8g0459 | 19 | 286 | C2H2 Transcription Factor Family | AT2G28200 | 40.523 | 7.11e-53 | 172 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Aed8g0459 | zf-C2H2_6 | 1.1e-12 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aed8g0459 | - | - | gmx:100785596 | 400.593 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aed8g0459 | 8 | 3879839 | 3880699 | Aed1g2622 | 1 | 21830526 | 21831593 | ECH | |
Aed8g0459 | 8 | 3879839 | 3880699 | Aed8g0459 | 8 | 3879839 | 3880699 | ECH | |
Aed8g0459 | 8 | 3879839 | 3880699 | Aed1g1083 | 1 | 10699725 | 10700672 | ECH | |
Aed2g1895 | 2 | 23578433 | 23579314 | Aed8g0459 | 8 | 3879839 | 3880699 | PCT |