Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0453 ATGCTCCAAACAACCTGCATTTTGCTCCTCTCCATTCTGGCCTCATTTTTGCCTCATGGAACACCAATGCTCAACCTCACTCTCCCAGGCCAACACCCTGATCCTGAAGCCGTTGCTCTGGAAGTTCATAGGTACGACATCATTCCAAGACCTCATTTTTCTGTCTTTTTTTACTCTCTCATTTTTGCTGCAAAACACAATCACTCACTGAACACATTTTTTTTACTCCATCTTGGAGAGACCCTACATTGCAAATTATCATCCCATCCTATAGCAGCATCGTCCTGCATCACAGGGAACCCCATTGACGATTGTTGGAAATGCGACCCAGATTGGGCCAACAACAGGCAAAGACTAGCTGATTGTGCAATTGGGTTCGGTCAGAACGCAAAAGGAGGAAAAGGTGGCCAATTTTACATAGTCACCGATTCCTCAGATAAGGACCCTGTGAACCCAAAACCTGGAACACTTAGATATGCAGTGATACAGAACGAGCCACTGTGGATAGTGTTCCCCAGTAATATGATGATTAAGCTCTCCCAAGAACTCATTTTCAACAGCTTCAAAACCATTGATGGGCGTGGAGCTGATGTGCACATTGTGGGTGGAGGCTGCATCACTCTTCAGTATGTTAGCAATGTCATCATTCACAACATTCACATCCACCATTGCCACCCCTCTGGCAACGCTAACGTGCGTTCAAGCCCAGAGCACTACGGTTACCGGACCGAATCCGACGGCGACGGGATCTCAATATTCGGGTCGCGCAACATCTGGATCGACCACTGCACCCTCTCGCGATGCAAGGACGGGCTGATCGACGCGGTGATGGGGTCCACCGCCATAACAATCTCAAACAACCACTTCTCTCACCACAACGACGTGATGCTATTAGGCCACAGCGACCACTACCTCCCCGACTCCGCCATGCAGGTGACCATCGCCTTCAACCACTTCGGCGAGGGGCTCGTGCAGCGCATGCCCCGGTGCCGCCGCGGCTACATCCACATCGTCAACAACGACTTCACGCGATGGGAGATGTACGCCATCGGAGGGAGCGCGGGCCCAACCATCAACAGCCAGGGGAACCGGTTCACGGCGCCCGAGGATCCCTACGCGAAGCAGGTGACAAAGAGGCTGGACTCTGGGGAGGGGGAGTGGAGCGGGTGGAATTGGAGGTCCGAAGGGGATGTTCTGCTGAACGGTGCGTTTTTCGTTGCTTCCGGTGGGGTTTCTGAACCCAACTACCAGAATGCGTACAGCGTCGAACCTAAGAATGTGGATCGCATCTCGCTGCTTACCATGTCCGCTGGCGTTCTCGGCGTTGCCAGGGACAATAATCTGGGAATGTGGACTAGAGGACCCAATGATGCTGGTGTATATTTTTCAGATTCCGGGCGCCCAGAATACACTGACGACATGTCCCGGAGTACAACGCCGTTGCTACCTTCACGTACTTTGGTTATTGTGTCTGCATTTGTTGCATTGTTATGCTTCTTAGGTCATACAATACAACAACCTTAA 1524 0.5157 MLQTTCILLLSILASFLPHGTPMLNLTLPGQHPDPEAVALEVHRYDIIPRPHFSVFFYSLIFAAKHNHSLNTFFLLHLGETLHCKLSSHPIAASSCITGNPIDDCWKCDPDWANNRQRLADCAIGFGQNAKGGKGGQFYIVTDSSDKDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYVSNVIIHNIHIHHCHPSGNANVRSSPEHYGYRTESDGDGISIFGSRNIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNDVMLLGHSDHYLPDSAMQVTIAFNHFGEGLVQRMPRCRRGYIHIVNNDFTRWEMYAIGGSAGPTINSQGNRFTAPEDPYAKQVTKRLDSGEGEWSGWNWRSEGDVLLNGAFFVASGGVSEPNYQNAYSVEPKNVDRISLLTMSAGVLGVARDNNLGMWTRGPNDAGVYFSDSGRPEYTDDMSRSTTPLLPSRTLVIVSAFVALLCFLGHTIQQP 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0453 507 PANTHER PECTATE LYASE 86 463 - -
Aed8g0453 507 PANTHER PECTATE LYASE 1 48 - -
Aed8g0453 507 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Aed8g0453 507 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Aed8g0453 507 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Aed8g0453 507 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Aed8g0453 507 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Aed8g0453 507 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Aed8g0453 507 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Aed8g0453 507 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Aed8g0453 507 Pfam Pectate lyase 183 365 IPR002022 -
Aed8g0453 507 Gene3D - 99 441 IPR012334 -
Aed8g0453 507 PANTHER PECTATE LYASE 18-RELATED 86 463 IPR045032 GO:0030570
Aed8g0453 507 PANTHER PECTATE LYASE 18-RELATED 1 48 IPR045032 GO:0030570
Aed8g0453 507 SUPERFAMILY Pectin lyase-like 79 414 IPR011050 -
Aed8g0453 507 SMART amb_all 174 371 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0453 Aed-Chr8 3835394 3838891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0453 1 503 Polysaccharide Lyase AT3G53190 64.314 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0453 K01728 - gmx:100815062 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0453 8 3835394 3838891 Aed8g0453 8 3835394 3838891 ECH
Aed2g1889 2 23532292 23533131 Aed8g0453 8 3835394 3838891 PCT