Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0448 ATGTCTACCTCCGCAGCAGCTTCTCTCGCTCTCCCAACCCTTACACTCCGAACCCGACAGCCTCTGTGCTCTTCTCCCCAATGCTTCTCATCCCTCTCCCTAACCCCCAATTCCAAACCCATTTCCATCTCCGCCGTTTTCCTCAAACCGACGTTGTCTTTGTCGCTCTCGTCTCGCTTCGTTCCGCGCGTTGCGGTTTCGTCGGAGCTCGACCAGGATGAGGAGGATACCTTCAGCGACGACGGAGACAGCCGCAGCTTCTCCCCCGACCTTAAGCTCTTCGTCGGGAACCTTCCGTTCAGCGTCGATAGCGCGCAGCTCGCTGAGATTTTCGAAAGCGCCGGGAATGTGGAAGTCGTTGAGGTGATTTATGACAAGACAACTGGGAGAAGCAGGGGATTTGGGTTTGTGACCATGTCTTCGGCTGAGGAAGCTGAAGCGGCTGCTCAGCAATTCAATGGCTATGAAGTGGATGGAAGAGCATTGAGAGTGAATTCTGGGCCACCTCCTCCTCGTAGTGACAGTTCTCCTCGTTTTAATGATGGTGCTCCTCGTTTTAGAGGTGGATTTTCTGGATCCAGAGGTGGTGGTTCTTCAGATAGTGAAAACCGTGTTCATGTAGGTAATCTTGCTTGGGGTGTTGATAATGTAGCACTTGAATCATTGTTTCGGGAACAAGGAAAGGTCTTGGAAGCTAGGGTAATCTATGACAGGGAAAGTGGCCGATCAAGAGGCTTTGGATTTGTGACCTACAGTAGCCCTGAAGAGGTCAACAGTGCAATTCGGTCCTTAGACGGCGCGGATTTGAATGGCAGAGCTATACGAGTCTCACCAGCAGATTCCAAGCCCAAGCCACGGTTTTGA 864 0.5197 MSTSAAASLALPTLTLRTRQPLCSSPQCFSSLSLTPNSKPISISAVFLKPTLSLSLSSRFVPRVAVSSELDQDEEDTFSDDGDSRSFSPDLKLFVGNLPFSVDSAQLAEIFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSAEEAEAAAQQFNGYEVDGRALRVNSGPPPPRSDSSPRFNDGAPRFRGGFSGSRGGGSSDSENRVHVGNLAWGVDNVALESLFREQGKVLEARVIYDRESGRSRGFGFVTYSSPEEVNSAIRSLDGADLNGRAIRVSPADSKPKPRF 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0448 287 Gene3D - 65 198 IPR012677 -
Aed8g0448 287 Gene3D - 199 287 IPR012677 -
Aed8g0448 287 MobiDBLite consensus disorder prediction 160 203 - -
Aed8g0448 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Aed8g0448 287 PANTHER OS02G0815200 PROTEIN 4 287 - -
Aed8g0448 287 SMART rrm1_1 204 277 IPR000504 GO:0003723
Aed8g0448 287 SMART rrm1_1 92 165 IPR000504 GO:0003723
Aed8g0448 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 163 IPR000504 GO:0003723
Aed8g0448 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 275 IPR000504 GO:0003723
Aed8g0448 287 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 4 287 - -
Aed8g0448 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 169 IPR000504 GO:0003723
Aed8g0448 287 SUPERFAMILY RNA-binding domain, RBD 200 285 IPR035979 GO:0003676
Aed8g0448 287 SUPERFAMILY RNA-binding domain, RBD 86 198 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0448 Aed-Chr8 3776915 3779976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0448 93 282 Eukaryotic Initiation Factors Gene Family AT1G49760 26.316 2.91e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0448 - - gmx:100786275 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0448 8 3776915 3779976 Aed8g0448 8 3776915 3779976 ECH
Aed4g0044 4 294981 298176 Aed8g0448 8 3776915 3779976 PCT