LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed8g0446	ATGGCAGCAGCAGAAAATGGCAACAACACTTTCTGCTTGAGTAGTGTTAACAACAACAATGGGAACGGTGTTGCTAACTACGATCCCTTGAACTGGGGTGCTGCGGCGGAGGCTATGGCGGGGAGCCACCTCAACGAGGTGAAGCGCATGGTGGAGGAGTACCGGAGGCCCATCGTCAAGCTCGGCGGTCAGACCCTCACGATCTCGCAGGTTGCCGCGATCGCCTCCCACGATCAAGGGATCAAGGTGGAGTTGGCTGAGTCCGCCAGGGCCGGCGTCAAGGCCAGCAGTGACTGGGTCATGGACAGCATGGACAAGGGCACTGACAGCTACGGCGTCACCACCGGCTTCGGCGCCACCTCCCACCGCAGAACCAAACAGGGCGGTGCCTTGCAGAAGGAGCTAATTAGGTTTTTGAATGCTGGAATATTTGGCAATGGTACAGAGTCGAACTGCACCCTACCCCACACAGCAACAAGAGCAGCAATGCTAGTGAGAATCAACACACTCCTCCAAGGCTACTCAGGCATAAGGTTTGAAATCCTGGAGGCAATCACAAAGCTTCTGAACAGCAACATCACACCATGCCTCCCCCTCAGAGGAACAATCACAGCATCAGGTGACCTTGTTCCTCTGTCTTACATTGCCGGCTTGCTAACCGGCAGACCGAACTCCAAGGCCGTTGGACCCTCAGGGGAGATTCTGAATGCCAAGGAAGCCTTCGAATCAGCCAACATCAACGGCTCTGAGTTCTTTGAGTTGCAGCCTAAGGAAGGCCTTGCACTTGTGAATGGCACTGCTGTTGGGTCCGGCTTGGCTTCAATTGTTCTTTTCGAAGCAAACATCCTTGCTGTTCTGTCCGAGGTTATTTCAGCTGTTTTTGCTGAAGTTATGCAAGGAAAGCCTGAATTCACTGATTACTTGACTCACAAGCTAAAGCACCACCCTGGTCAGATTGAAGCTGCTGCTATTATGGAACACATTTTGGATGGAAGCTCTTACATGAAAGCTGCTAAGAAGTTGCATGAGATTGACCCTTTGCAGAAGCCTAAGCAAGACCGTTATGCTCTTAGGACTTCACCACAATGGCTTGGCCCTCAGATTGAAGTGATTAGATTCTCCACCAAGTCAATTGAGAGGGAGATTAACTCTGTCAATGACAACCCTTTGATTGATGTGTCTAGGAACAAGGCACTTCATGGTGGTAACTTCCAAGGAACGCCAATTGGAGTGTCCATGGACAACACACGTTTGGCCATTGCTTCTATTGGGAAACTCATGTTTGCTCAATTCTCGGAGCTTGTCAATGACTACTACAACAACGGCTTGCCCTCCAATCTCACCGCCAGCAGGAACCCCAGCTTGGATTATGGATTCAAGGGATCAGAGATCGCGATGGCGTCTTATTGTTCTGAGCTGCAATACTTGGCGAACCCGGTGACAAGCCATGTGCAAAGCGCGGAGCAGCACAACCAGGATGTGAACTCGTTGGGTTTGATTTCTTCACGGAAGACAAATGAGGCTGTTGAGATCCTCAAGCTAATGTCATCCACTTTCCTCGTTGCGCTTTGCCAGGCCATTGACCTGAGACATTTGGAGGAGAATCTGAAGAACACGGTGAAGAACGTGGTGAGCCAAGTTGCTAAGAGGACTCTCACCACAGGTGTGAATGGAGAGCTTCACCCTTCGAGATTCTGTGAGAAGGACTTGCTTAAGGTTGTTGATAGGGAGTACACATTTGCATACATTGATGACCCCTGCAGTGGAACATACCCTTTGATGCAGAAGCTGAGGCAAGTGCTTGTGGATTATGCTTTGGCCAATGGTGAGAATGAGAAGAACACAAACACTTCAATCTTCCAAAAGATTGCAACTTTTGAGGAGGAGTTGAAGACCCTCTTGCCCAAGGAAGTGGAAGGTGCAAGGCTTGCATATGAGAATGACCAGTGTGCAATCCCCAACAAGATCAAGGAATGCAGGTCTTACCCCTTGTACAAGTTTGTGAGAGAGGAGTTGGGGACAGCATTGCTGAGTGGTGAAAAGGTTGTGTCACCGGGTGAAGAGTGTGACAAAGTGTTCACTGCTTTGTGCCAAGGTAGAATCATTGATCCACTCTTGGAATGCCTTGGAGAGTGGAATGGTGCACCTCTTCCAATTTCTTAG	2163	0.4984	MAAAENGNNTFCLSSVNNNNGNGVANYDPLNWGAAAEAMAGSHLNEVKRMVEEYRRPIVKLGGQTLTISQVAAIASHDQGIKVELAESARAGVKASSDWVMDSMDKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFESANINGSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVISAVFAEVMQGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDYYNNGLPSNLTASRNPSLDYGFKGSEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAVEILKLMSSTFLVALCQAIDLRHLEENLKNTVKNVVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYTFAYIDDPCSGTYPLMQKLRQVLVDYALANGENEKNTNTSIFQKIATFEEELKTLLPKEVEGARLAYENDQCAIPNKIKECRSYPLYKFVREELGTALLSGEKVVSPGEECDKVFTALCQGRIIDPLLECLGEWNGAPLPIS	720

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aed8g0446	720	TIGRFAM	phe_am_lyase: phenylalanine ammonia-lyase	28	709	IPR005922	GO:0005737\|GO:0006559\|GO:0016841
Aed8g0446	720	Pfam	Aromatic amino acid lyase	66	547	IPR001106	-
Aed8g0446	720	Gene3D	Fumarase/aspartase (Central domain)	267	715	-	-
Aed8g0446	720	PANTHER	PHENYLALANINE AMMONIA-LYASE 1-LIKE	17	719	-	-
Aed8g0446	720	PANTHER	HISTIDINE AMMONIA-LYASE	17	719	IPR001106	-
Aed8g0446	720	ProSitePatterns	Phenylalanine and histidine ammonia-lyases signature.	201	217	IPR022313	GO:0016841
Aed8g0446	720	Gene3D	-	533	654	IPR023144	-
Aed8g0446	720	Gene3D	-	19	266	IPR024083	-
Aed8g0446	720	CDD	PAL-HAL	64	530	IPR001106	-
Aed8g0446	720	SUPERFAMILY	L-aspartase-like	28	719	IPR008948	GO:0003824

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed8g0446	Aed-Chr8	3734422	3738840	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed8g0446	28	719	Monolignol Biosynthesis Gene Families	AT2G37040	83.382	0.0	1222

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed8g0446	K10775		-	gmx:100803857	1340.48

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed8g0446	8	3734422	3738840	Aed1g2502	1	20736294	20739815	ECH
	Aed8g0446	8	3734422	3738840	Aed8g0446	8	3734422	3738840	ECH

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