Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0436 ATGGCTAACCAACCACCCGAGTCCTCCGATGCTGCTAAGGGAACAAAGAGGGACTTCAGCACGGCGATCCTCGAGCGTAAGAAGGCGCCGAACCGACTTGTCGTTGACGAGGCTGTAAACGATGACAACTCCGTCGTCGCGCTTCATCCTGACACCATGGAGAAGCTCCAGCTCTTCCGCGGTGACACTATTCTGCTCAAGGGGAAGAAAAGGAAGGATACGATTTGTATTGCTCTGGCTGATGAGACGTGTGAGGAGCCGAAGATTCGGATGAACAAGGTTGTGAGGAACAACCTTAGGGTTAGGCTTGGAGACGTTGTGTCTGTTCACCAGTGTGCTGATGTTAAGTACGGAAAGCGTGTGCACATTCTCCCTGTCGATGACACCATTGAAGGGGTTACTGGGAATCTCTTTGACGCATACCTGAAACCTTATTTCCTTGAGGCATATAGACCAGTGAGGAAGGGGGATATGTTCCTTGTGAGAGGGGGGATGAGAAGTGTGGAGTTCAAGGTTATTGAAACTGATCCTGCTGAGTACTGTGTTGTTGCTCCTGACACTGAGATTTTCTGTGAGGGAGAGCCTGTTAAAAGGGAAGATGAGAATCGATTGGACGAGGTTGGTTATGATGATGTTGGTGGTGTTAGAAAGCAGATGGCGCAGATTCGGGAACTGGTGGAACTGCCATTGAGGCATCCACAATTGTTCAAATCTATTGGTGTTAAGCCACCGAAAGGAATTCTTCTGTATGGACCACCTGGGTCTGGTAAGACTTTAATTGCTCGGGCTGTTGCAAATGAAACTGGGGCCTTCTTTTTCTGCATCAATGGCCCTGAGATCATGTCTAAATTGGCTGGTGAGAGTGAAAGCAATCTGAGGAAGGCATTTGAGGAAGCTGAGAAGAATGCACCCTCTATTATCTTCATTGATGAGATAGATTCAATAGCTCCAAAGCGTGAGAAGACTCATGGGGAGGTTGAGAGGAGAATTGTTTCCCAACTCTTGACCCTCATGGATGGGCTTAAATCCCGTGCACATGTAATTGTTATTGGAGCCACGAATCGTCCCAATAGCATTGACCCTGCTCTTAGGAGGTTTGGAAGATTTGATCGTGAGATAGATATTGGTGTTCCAGATGAAGTTGGACGTCTTGAGGTTCTTCGTATCCATACAAAAAATATGAAGCTCGCTGAAGATGTTGATTTGGAAAGGATTGCTAAGGAAACCCATGGATATGTTGGTGCTGATTTGGCTGCTTTGTGTACTGAAGCTGCTCTTCAGTGCATCAGAGAGAAAATGGATGTCATTGACTTGGAAGATGAGACCATTGATGCTGAGATACTGAACTCAATGGCAGTGACAAATGAACATTTCCAGACTGCTCTTGGAACAAGCAATCCTTCTGCTCTCCGAGAAACAGTTGTTGAAGTGCCCAATGTCAGCTGGGAAGATATTGGTGGTCTTGAAAACGTGAAGAGAGAACTCCAAGAGACTGTTCAATATCCAGTGGAACACCCTGAAAAATTTGAGAAGTTTGGAATGTCACCTTCAAAGGGGGTTCTTTTCTATGGTCCTCCTGGTTGTGGTAAAACCCTTTTGGCAAAAGCTATTGCCAATGAATGTCAGGCAAACTTCATCAGTATCAAAGGTCCCGAGCTACTCACAATGTGGTTTGGAGAAAGTGAGGCAAATGTGAGGGAGATTTTTGACAAAGCACGTGGTTCTGCTCCATGTGTCCTTTTCTTTGACGAACTTGACTCTATTGCAACTCAGAGAGGCAGCAGTGTAGGAGATGCTGGTGGTGCTGCTGACAGAGTTTTGAATCAATTGCTTACAGAGATGGATGGGATGTCAGCAAAGAAAACCGTGTTCATCATTGGGGCCACTAATCGACCAGACATCATAGATCCTGCTCTTTTGCGACCAGGTCGTCTGGACCAATTGATTTATATCCCACTTCCAGATGAGGATTCCCGCCATCAGATATTTAAAGCTTGCTTAAGAAAATCTCCTGTTTCAAAAGATGTTGACCTTAGAGCTCTTGCCAAGTATACTCAAGGCTTCAGTGGTGCAGATATTACTGAAATTTGCCAGCGTTCATGCAAGTATGCTATAAGAGAGAACATTGAGAAGGATATTGAAGAGGAAGAGGTAGCTGAAATCAAGGCAGCTCATTTTGAAGAATCAATGAAGTATGCACGAAGGAGTGTTAGTGATGCCGACATTCGCAAATTTTAA 2238 0.4535 MANQPPESSDAAKGTKRDFSTAILERKKAPNRLVVDEAVNDDNSVVALHPDTMEKLQLFRGDTILLKGKKRKDTICIALADETCEEPKIRMNKVVRNNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDMFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERIAKETHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRSCKYAIRENIEKDIEEEEVAEIKAAHFEESMKYARRSVSDADIRKF 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0436 745 SUPERFAMILY ADC-like 29 112 IPR009010 -
Aed8g0436 745 CDD AAA 486 653 - -
Aed8g0436 745 Gene3D - 477 745 IPR027417 -
Aed8g0436 745 SUPERFAMILY Cdc48 domain 2-like 114 206 IPR029067 -
Aed8g0436 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 468 IPR027417 -
Aed8g0436 745 PANTHER - 9 745 - -
Aed8g0436 745 Gene3D - 9 114 - -
Aed8g0436 745 SMART AAA_5 516 655 IPR003593 -
Aed8g0436 745 SMART AAA_5 243 379 IPR003593 -
Aed8g0436 745 Pfam Cell division protein 48 (CDC48), N-terminal domain 32 113 IPR003338 -
Aed8g0436 745 SMART CDC48_2_2 132 198 IPR004201 -
Aed8g0436 745 Pfam AAA+ lid domain 675 717 IPR041569 -
Aed8g0436 745 Pfam AAA+ lid domain 399 441 IPR041569 -
Aed8g0436 745 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 33 744 IPR005938 GO:0016787
Aed8g0436 745 Gene3D - 115 211 - -
Aed8g0436 745 Gene3D - 654 731 - -
Aed8g0436 745 ProSitePatterns AAA-protein family signature. 623 641 IPR003960 GO:0005524|GO:0016887
Aed8g0436 745 CDD AAA 213 376 - -
Aed8g0436 745 Pfam Cell division protein 48 (CDC48), domain 2 134 197 IPR004201 -
Aed8g0436 745 SMART CDC48_N_2 32 115 IPR003338 -
Aed8g0436 745 Gene3D - 378 473 - -
Aed8g0436 745 Gene3D - 212 376 IPR027417 -
Aed8g0436 745 Pfam ATPase family associated with various cellular activities (AAA) 247 376 IPR003959 GO:0005524|GO:0016887
Aed8g0436 745 Pfam ATPase family associated with various cellular activities (AAA) 520 653 IPR003959 GO:0005524|GO:0016887
Aed8g0436 745 ProSitePatterns AAA-protein family signature. 347 365 IPR003960 GO:0005524|GO:0016887
Aed8g0436 745 PANTHER AAA-FAMILY ATPASE 9 745 - -
Aed8g0436 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 741 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0436 Aed-Chr8 3616542 3620947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0436 449 724 Calmodulin-binding Proteins AT3G56690 47.464 3.54e-81 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0436 K13525 - gmx:100806067 1425.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0436 8 3616542 3620947 Aed8g0436 8 3616542 3620947 ECH