Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0419 ATGGGTAGAGCTCCTTGTTGTGACAAGAACAATGTAAAGAAAGGGCCATGGAGTCCCGAAGAAGATGAGAAGCTAAGAGAGCACATAGAGAAACAAGGCACTGGAGGGAACTGGATTGCTCTCCCACAAAAAGCTGGTTTGAAAAGATGTGGAAAGAGTTGTAGACTCAGATGGCTTAATTATCTCAGACCAAACCTAAAGCATGGGGAGTTTTCCGAAGATGAAGATAGAATAATCTGCACACTCTTTGCTAGCATTGGAAGCAGGTGGTCAATAATTGCATCTCAGTTGCCAGGAAGGACTGACAATGATATCAAGAACTATTGGAACACCAAACTCAAGAAGAAAATGATGGGAGTGAACCCTTCACCACTGAAGAAAAAACCCCACCAAGTTACCACCCTTTCATCCATGCTTCAAAACTCAACACCATCTTCATTCAAAAACAACCACAACAACTCTTACTACTACTACACAGGCTCTGAGTCCATTTCATACTCAAGTCTTCTGAGTGGCAATACTACTTCTGAGGGCCTTCAGAATTACCAAGTTAATAATAATAATAGTGCCTTTGTGTTAGGGGGTGAAAGTACAAGTTGCAGCTCTTCTTCAGATGGAAGCTGCAACAACAACAACAACAATCAGATCAATCATGTCAAAGAAGCAGAACTTGGATTTATTAATGATGCAACTTTTGGTGGTCTTAGTTACCTCTCTAGTGGGGTGGAAGATACACAAAAGTTGTTGGTGCCCTCCAATGCTGGTAGGGTTAGTGGGGTGACAGATGAACAAAGTAGATTATGGGAAGAAAGTTCATTAGAGTATGGTCTTGAAGAAATTAAACAGCTAATAAGCACTGGTAGTTGCAACAACTTTATGTACTACTGA 888 0.4099 MGRAPCCDKNNVKKGPWSPEEDEKLREHIEKQGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEDEDRIICTLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGVNPSPLKKKPHQVTTLSSMLQNSTPSSFKNNHNNSYYYYTGSESISYSSLLSGNTTSEGLQNYQVNNNNSAFVLGGESTSCSSSSDGSCNNNNNNQINHVKEAELGFINDATFGGLSYLSSGVEDTQKLLVPSNAGRVSGVTDEQSRLWEESSLEYGLEEIKQLISTGSCNNFMYY 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0419 295 Gene3D - 69 142 - -
Aed8g0419 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aed8g0419 295 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Aed8g0419 295 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Aed8g0419 295 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Aed8g0419 295 CDD SANT 16 62 IPR001005 -
Aed8g0419 295 PANTHER TRANSCRIPTION FACTOR RAX3 1 291 - -
Aed8g0419 295 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Aed8g0419 295 SMART sant 13 64 IPR001005 -
Aed8g0419 295 SMART sant 67 115 IPR001005 -
Aed8g0419 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Aed8g0419 295 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aed8g0419 295 MobiDBLite consensus disorder prediction 1 22 - -
Aed8g0419 295 CDD SANT 70 113 IPR001005 -
Aed8g0419 295 PANTHER OS09G0431300 PROTEIN 1 291 - -
Aed8g0419 295 Gene3D - 6 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0419 Aed-Chr8 3461630 3464498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0419 1 119 MYB Transcription Factor Family AT5G57620 84.874 1.29e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed8g0419 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0419 K09422 - gmx:100820139 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1873 2 23430947 23432765 Aed8g0419 8 3461630 3464498 PCT