Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0406 ATGATTACATTCATGGACTCAAAGGAGAAATCAAAGGAGGTGGAGAAATGTTTGGATCCACAGCTATGGCATGCGTGTGCAGGTGGTATGGTGCAGATGCCAACAGTGAACACTAAGGTCTATTACTTCCCTCAGGGTCATGCTGAGCATGCATGTGGACCAGTTAACTTCAAGACTTGTCCAAAGGTTCCACCTTTGGTTCCATGCAGAGTGGCTGCTATCAAATACATGGCCGATCTTGAGACCGATGAGGTCTATGCCAAACTCAGGCTTGTTCCTCTAAATGCCAATGATGTTGATTATGACCATGATGTTGTTGTTGTCGGGGCTGAGACTCAGGACAAGCCTGCTTCATTTGCAAAAACCTTAACCCAATCTGATGCCAACAATGGTGGGGGATTTTCTGTTCCTAGGTACTGTGCTGAGACAATTTTCCCTCGTTTGGACTACTCGGCAGACCCTCCTGTTCAGAACATCCTTGCCAAGGATGTTCATGGGGAAACATGGAAGTTCCGACACATATATAGGGGCACGCCACGGCGGCATCTGTTGACTACCGGGTGGAGTACTTTCGTGAATCACAAGAAACTTGTTGCTGGGGACTCAATTGTGTTTCTGAGGGCAGAAAATGGGGATCTCTGTGTCGGGATTCGGCGAGCAAAGAAGGGGATTGGTGGGGGACTTGAGGCTTCCTCAGGGTGGAATCCTGCAGGAGGAAACTCTCATATGCCTTATGGTGGATTCTCACCTTTTTTGAGAGAGGATGATAATAGAATCTTGAGAAATGGTAACAGCAATGGGTTGAATCCAAGTGTGAGTATGATGGGAAAGGGGAAAGTGAGGCCAGAAGCAGTTCTTGAAGCTGCAAACTTTGCAGCCAATAAGCAACCTTTTGAGGTTGTTTACTACCCTCGGGCTAGTACTCCAGAGTTTTGTGTGAAGGCCTCACTAGTTGAAGCAGCAATGCAAATTAGGTGGTGTTCTGGAATAAGGTTTAAGATGGCCTTTGAAACAGAAGACTCCTCACGAATAAGTTGGTTTATGGGAACCATATCTTCGGTTCAGGTTGCTGATTCCCTTAACTGGCCTAACTCACCTTGGAGGCTTCTTCAGGTTACATGGGATGAACCAGATTTACTTCAAAACGTGAGAAGGGTGAATCCATGGCTGGTTGAATTGGTGTCAAACATGCCTTCCATTCATTTTTCCCCTTTCTCGCCACCACGGAAGAAATTGAGATTGCCTCAACTTCCAGATTTCCCAATTGACAGCCAGATTCCTTTGCCAACATTTCCAAACAACACCAACCAATTCGGTTGTCTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCACTATGGACTATCCATATCAGATCTCCACCTCAGTAAACTACATTCAGGTCTATTTCCGGCCGGTTTCCCACTTCTTGATCATGCTGCTACAACAATGAGGGTCTCAAATAGCATAACATCTCAAAAGTCTTGCTTACTATCTATGCCAAATTCTTCTCAGTCTTCAAGGAAATTGGATGATGTGAAGACACCTCCTCAGCTCGTGCTTTTCGGCCAGAAAATCCTCACCGAGCAACAGATCTCTTCGAGCAGCTCTGGCGATACACTCTCCCCTGTTCTTACCAGAAATTGTTCGTCCGATGGAAATGCTGATAAAGTGACTAATTTTCTCAATGAACGGTTCCAATGGTATAAGGATAACCACCAAGAAGAAACTGAGACCGGTCACTGTAAAGTTTTTATGGAGTCTGAAGATGTAGGTCGGACTATGGACCTCTCGTTGCTTCAGTCTTATGATGAACTATACAGAAAGCTGACAGACATGTTTGGCATAGAGAAATCTGAAATGTTAAGTCAGGTACTCTATCGCGATTCAACTGGAGCTGTCAAACACATTGGTGATGAACCATTCAGTGATTTCACAAGAACAGCTAGGAGGTTGACTATTCTAATGGATTCTGGCAGCAACAATGTAGGAGTGTAG 2010 0.4542 MITFMDSKEKSKEVEKCLDPQLWHACAGGMVQMPTVNTKVYYFPQGHAEHACGPVNFKTCPKVPPLVPCRVAAIKYMADLETDEVYAKLRLVPLNANDVDYDHDVVVVGAETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGLEASSGWNPAGGNSHMPYGGFSPFLREDDNRILRNGNSNGLNPSVSMMGKGKVRPEAVLEAANFAANKQPFEVVYYPRASTPEFCVKASLVEAAMQIRWCSGIRFKMAFETEDSSRISWFMGTISSVQVADSLNWPNSPWRLLQVTWDEPDLLQNVRRVNPWLVELVSNMPSIHFSPFSPPRKKLRLPQLPDFPIDSQIPLPTFPNNTNQFGCLPESTPAGMQGARHAHYGLSISDLHLSKLHSGLFPAGFPLLDHAATTMRVSNSITSQKSCLLSMPNSSQSSRKLDDVKTPPQLVLFGQKILTEQQISSSSSGDTLSPVLTRNCSSDGNADKVTNFLNERFQWYKDNHQEETETGHCKVFMESEDVGRTMDLSLLQSYDELYRKLTDMFGIEKSEMLSQVLYRDSTGAVKHIGDEPFSDFTRTARRLTILMDSGSNNVGV 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0406 669 SMART B3_2 119 221 IPR003340 GO:0003677
Aed8g0406 669 Gene3D - 325 399 - -
Aed8g0406 669 PANTHER AUXIN RESPONSE FACTOR 6 660 - -
Aed8g0406 669 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 660 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed8g0406 669 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677
Aed8g0406 669 SUPERFAMILY DNA-binding pseudobarrel domain 112 220 IPR015300 -
Aed8g0406 669 Pfam Auxin response factor 288 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed8g0406 669 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Aed8g0406 669 CDD B3_DNA 118 219 IPR003340 GO:0003677
Aed8g0406 669 ProSiteProfiles PB1 domain profile. 583 663 IPR000270 GO:0005515
Aed8g0406 669 Gene3D - 579 667 - -
Aed8g0406 669 Gene3D - 117 221 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0406 Aed-Chr8 3361313 3367049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0406 14 669 B3 DNA Binding Superfamily AT4G30080 58.997 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aed8g0406 B3 3.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0406 - - gmx:100796522 1175.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0406 8 3361313 3367049 Aed1g2493 1 20649504 20653122 ECH
Aed8g0406 8 3361313 3367049 Aed8g0406 8 3361313 3367049 ECH
Aed8g0406 8 3361313 3367049 Aed1g1121 1 11017659 11020658 ECH
Aed8g0406 8 3361313 3367049 Aed5g0533 5 3845334 3848632 ECH