Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0402 ATGCCACCGAAGTTCGATCCCTCGCAGGTGATTGATGTGTACGTCCGCGTCACCGGCGGCGAGGTAGGCGCGGCGAGTTCCCTCGCCCCGAAGATCGGACCCCTGGGACTCTCCCCAAAGAAAATCGGAGAGGACATCGCGAAGGAAACCGCAAAGGACTGGAAGGGCCTCCGCGTGACGGTGAAGCTCACCGTTCAGAACCGTCAGGCGAAGGTGACGGTGGTGCCCTCCGCCGCCGCGCTGGTTATCAAGGCCCTAAAAGAGCCCGAGAGGGACAGGAAGAAGACCAAGAACATCAAGCACAGCGGGAACATATCTCTCGACGACGTCGTTGAGATCGCGCGGGTGATGAGTACGCGCTCCATGGCTAAGGATCTCAGCGGAACCATTAAGGAGATTCTCGGGACTTGCGTTTCGGTGGGATGCACCGTCGATGGGAAGGACCCCAAGGATCTGCAGCAGGAGATTTCTGATGGAGATATCGAGGTTCCCCTTGAATGA 501 0.5868 MPPKFDPSQVIDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHSGNISLDDVVEIARVMSTRSMAKDLSGTIKEILGTCVSVGCTVDGKDPKDLQQEISDGDIEVPLE 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0402 166 Gene3D - 1 81 IPR036796 -
Aed8g0402 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Aed8g0402 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Aed8g0402 166 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Aed8g0402 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Aed8g0402 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Aed8g0402 166 PANTHER 60S RIBOSOMAL PROTEIN L12-3-LIKE 1 166 - -
Aed8g0402 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
Aed8g0402 166 Gene3D - 82 164 IPR036769 -
Aed8g0402 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 166 IPR000911 GO:0003735|GO:0005840|GO:0006412
Aed8g0402 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Aed8g0402 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0402 Aed-Chr8 3340601 3341101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0402 1 164 Cytoplasmic Ribosomal Protein Gene Family AT3G53430 87.805 3.70e-106 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0402 K02870 - gmx:100792317 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0402 8 3340601 3341101 Aed8g0402 8 3340601 3341101 ECH
Aed8g0402 8 3340601 3341101 Aed5g0526 5 3782155 3782655 ECH