Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0397 ATGGGTAACATAGGAAGCAGCGGCTCCAACAGCCGCCGGAGACACGGCGGAGGCGGAAGCGGGAGGCGAATTCACCCGCCGCCTCCTGCTCCGCCGGTGACGCCGCCGCCGGAAGTCACGGCGAACCGATTCGTATACCCCCCGGCCGCCACGCCGTATCACAACTACCCCGGGTACTACCCGCCGCCGAACACCATGCCGGCGCCGTTGCCGGCTCCGTACGACCACCACCACCGTCCGGCGGTGGACCCGATGTGGGGGAGGTATCCGGCGGCGCCGGTGGCACCGGCACCGTACGTGGAGCACCAGAAGGCGGTTACGATAAAGAACGATGTCAACATCAAGAAGGAGACGCTTAGGATTGAGCCTGATGACGAGAATCCTGGTCGTTTCCTCGTGTCGTTTACGTATGATGCCACCGTTTCGGGGAGCATCACCATACTTTTCTTTGCAAAAGAAGGGGAAGTTTGCACCCTAACCCCAATGAAGGAAAATGTTCTTCCACCCGTGACTGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAAACAGCCAGCTGGAACTGGAATTGATTTTTCAATGTTTGAGGAGTCTGAGTTATTGAAAGTAGGGGACATGGATATCTATCCTGTTGCAATTAAAGCAGATGGATCCTCTGTCGACGATGATGAATCAAAATTGAATGAAACTCCATCATCCGGTAGCTCAAACTCTCAGATAACTCAAGCAGTGTTTGAAAAGGAGAAAGGAGAGTTTCAGCTGAAGGTTGTGAAGCAGATCTTATGGGTAAATGGAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGATGTGGATGGGAATGACCCGGGAAAAGAGTGTGTTATATGCTTGTCAGAGCCTCGGGACACAACTGTCCTTCCATGTCGCCACATGTGTATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTTGGGCCTGAACCCGAGCATGAGCCCGAGTCTGAAGAGTGA 1068 0.5215 MGNIGSSGSNSRRRHGGGGSGRRIHPPPPAPPVTPPPEVTANRFVYPPAATPYHNYPGYYPPPNTMPAPLPAPYDHHHRPAVDPMWGRYPAAPVAPAPYVEHQKAVTIKNDVNIKKETLRIEPDDENPGRFLVSFTYDATVSGSITILFFAKEGEVCTLTPMKENVLPPVTVNFQQGLGQKFKQPAGTGIDFSMFEESELLKVGDMDIYPVAIKADGSSVDDDESKLNETPSSGSSNSQITQAVFEKEKGEFQLKVVKQILWVNGMRYELQEIYGIGNSVESDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEPEHEPESEE 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0397 355 Pfam Zinc finger, C3HC4 type (RING finger) 291 337 - -
Aed8g0397 355 SUPERFAMILY RING/U-box 292 338 - -
Aed8g0397 355 SMART ring_2 293 331 IPR001841 -
Aed8g0397 355 PANTHER MAHOGUNIN 1 348 IPR045194 GO:0061630
Aed8g0397 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 342 IPR013083 -
Aed8g0397 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 348 - -
Aed8g0397 355 MobiDBLite consensus disorder prediction 24 42 - -
Aed8g0397 355 MobiDBLite consensus disorder prediction 1 43 - -
Aed8g0397 355 MobiDBLite consensus disorder prediction 218 239 - -
Aed8g0397 355 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 292 332 IPR045195 -
Aed8g0397 355 ProSiteProfiles Zinc finger RING-type profile. 293 332 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0397 Aed-Chr8 3289271 3293353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0397 87 312 C3H Transcription Factor Family AT3G09770 66.383 1.85e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0397 - - gmx:100789032 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0397 8 3289271 3293353 Aed8g0397 8 3289271 3293353 ECH