Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0395 ATGAAACATGTCTGCTTCAGGCTTACACCACAACCTGTCTCCATGGCATTTTCCATCTTCCATGATCCAAGGAAGGTTTCATCTATCTTTCTTGCAGAACAAACATTTGTTTCAATTTCCATTGTTCAGCTCAATCCTCTGTTGTTTCTTCTCTTTGGTTTGGTGGGTACCCCACTGAACATGGCTACTGAAGCTTCAGACTTTTCCAAGGACAACAACAGCCATAACCATGGCACCACTGAAAATACTGCTGATATCACAATTCAAAAGGGTCCAGCATCATCTGAAATAACTGAGGAACTCCCAAGAGAACAACACGAGACAAGGCCAAACCTTATCTTGGATATTCCTGCTATATCTCAGGAGGAAGCAAGAGAAGACTATGTGAGGATAAACATGCCTCTAACCCCACCTCCAAAAAGAGTGATTTTTTCCCCTTGTCCAAGTCCTGTTTTCCCAAGAAGCAAAGAATCCCCAGGTCCCTCCTCATCAAAAAATAGATCAAATATTAAAACTTTTCTTCCCAAACTCAGTTTGAAATTTCGCAACACAAGTTCGGAGATTGAAAAGGCTGCCTTCCTAGCACTTGAAGGATCAGCAACAGTGGCACCAAAAAAGCCTTTTCTTTCAAGGACATTATCTCTTGTCACACCTAGAGGGAAGAAAACATCATCCTTACCTGTAACCCCAATTGCTCATTCAAATCCAGGGTCTGTACATGGAGGGAACTTAGCTTATGCAGAAACAGCTGAGAAAGTACCAATTCATCGTTCCCGTTCAGTACCTGCCCTTAACAAAGAAGGTAGCTCACCTGTACGTGGCATGTTTCGTATTGTTCCAACCACACTACGATTGGATGAGAAAATTGCCACAACAACACCTGTGACATCTCCAATTCATGATACTGTTAAAAATGAGGATGGTGGTGAAGATATTCCCGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAACTCGGAGAAGGTGCTGATACTTTCAAACTGGAGTGTAGCTGCAAAGGTGAGCTTTCATTGGCACACAAAGAATGTGCAGTCAAATGGTTTACCATTAAAGGTAATAGAACATGTGATGTATGCAAGCAAGAAGTTCAGAATCTACCTGTCACTCTTTTACGAGTTCAAAATGGTCTGGCCCATAACATGGCTGATTCTTCTCAATACAGGGTTTGGCAGGATGCTCCCATTCTTGTTGTTATCAACATGCTGGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTGTCTAATATGGGATCTGGTGCTATTGCCATGTCTCTCCCATTTTCATGTATATTGGGTCTTCTTGCAAGCATGACAGCTACAACAATGGTGAGGAGAAATCATGTTTGGATTTATGCAACTGTTCAGTTTTGCCTGGTGGTTCTTGCTGGGCATATTTTCTTCTCATTGGTTCATATACAAGCTGTTCTAGCTATCCTACTAGCTACATTTACTGGGTTTGGAGTTGTAATGTGTGGAGCTTCTATTCTTATGGAGATTTTGAAGTGGAGGGGAAGATCACTTGCTCAATCAAATCAACAACAGCAAGGTTCCCAAGAGGCAGCAGTACCACCCTCAGATCAATCATCTACAGTTGTTCATCAAGCTCAGATTGGTTCTGAACAAACTGAAAGTAATTTGGGAGAGTCTCCTACACTGAGGATTTGA 1686 0.4176 MKHVCFRLTPQPVSMAFSIFHDPRKVSSIFLAEQTFVSISIVQLNPLLFLLFGLVGTPLNMATEASDFSKDNNSHNHGTTENTADITIQKGPASSEITEELPREQHETRPNLILDIPAISQEEAREDYVRINMPLTPPPKRVIFSPCPSPVFPRSKESPGPSSSKNRSNIKTFLPKLSLKFRNTSSEIEKAAFLALEGSATVAPKKPFLSRTLSLVTPRGKKTSSLPVTPIAHSNPGSVHGGNLAYAETAEKVPIHRSRSVPALNKEGSSPVRGMFRIVPTTLRLDEKIATTTPVTSPIHDTVKNEDGGEDIPEEEAVCRICMVELGEGADTFKLECSCKGELSLAHKECAVKWFTIKGNRTCDVCKQEVQNLPVTLLRVQNGLAHNMADSSQYRVWQDAPILVVINMLAYFCFLEQLLVSNMGSGAIAMSLPFSCILGLLASMTATTMVRRNHVWIYATVQFCLVVLAGHIFFSLVHIQAVLAILLATFTGFGVVMCGASILMEILKWRGRSLAQSNQQQQGSQEAAVPPSDQSSTVVHQAQIGSEQTESNLGESPTLRI 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0395 561 MobiDBLite consensus disorder prediction 149 169 - -
Aed8g0395 561 Pfam RING-variant domain 319 366 IPR011016 GO:0008270
Aed8g0395 561 PANTHER OS02G0165000 PROTEIN 62 554 - -
Aed8g0395 561 SUPERFAMILY RING/U-box 315 370 - -
Aed8g0395 561 MobiDBLite consensus disorder prediction 520 561 - -
Aed8g0395 561 SMART ringv_2 318 367 IPR011016 GO:0008270
Aed8g0395 561 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 62 554 - -
Aed8g0395 561 ProSiteProfiles Zinc finger RING-CH-type profile. 311 373 IPR011016 GO:0008270
Aed8g0395 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 374 IPR013083 -
Aed8g0395 561 CDD RING_CH-C4HC3_MARCH 319 367 - -
Aed8g0395 561 MobiDBLite consensus disorder prediction 68 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0395 Aed-Chr8 3266965 3272129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0395 316 373 C3H Transcription Factor Family AT2G37950 42.373 2.37e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0395 - - gmx:100787963 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0395 8 3266965 3272129 Aed8g0395 8 3266965 3272129 ECH