Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0393 ATGCAAATGATGCCCGGTGACCCCTTTTCCCTATCCACTTCCATGGGAGGCTTCACTCATCAAGATCAGCAAAACACAAACCCTAACCCTAAACCTAATCCCCCTCCCAAGAAGAAAAGAAACCTTCCAGGAACACCAGATCCAGATGCTGAGGTTATTGCTCTATCTCCGAAGACCCTTATGGCCACGAACCGATTCATATGCGAAATATGCAACAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCACCGAAGGGGTCACAATCTTCCGTGGAAGCTGAGACAAAGGACCAACAAAGAGGTAAGAAAGAAAGTTTACATCTGCCCTGAACAAACCTGTGTCCACCACGATCCTGCAAGAGCACTCGGCGACCTCACTGGCATCAAAAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCAGTCCAATCTGATTGGAAAGCTCACACCAAAACCTGTGGCACTAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCTAGGAAGGACAGTTTCATTACTCATAGAGCGTTTTGCGATGCATTGGCTGAAGAGAGTGCAAGACTCACATCAGTGACCACAACGAATCTAAATTTCAAGAGTGAAGAAGGTGGTGGTAATGTGATGAACTCGCAGCATGGACTAATTGCAGCAACTCAGGGTCTTCATCATCATCAAAATGTTTCTGGGATTTCTCAATTTGGACCACATGGTTTTCGTATGGATTTCAATGGAATGGAACAACAAAGGCCAAGTTTGTCACTGTGGTTGAACCAGCAGGGGAATCCCCAGATGAATAATAATAACAATAGTGCTTCCGATGTGGGACCCAATTACATGTCGTCATGTTCTTCTTCGGGTTTGCCTGAGATTGTGCAAATGGCTCATCAGGCTAATGCTGCTTTAATGGGTTGTTCTTCATCGATGGTGTCTAGTTTTGGAGTTGCTGCGGGTTCTAATTCGAGTACCAGTGCGAATCTTTCACTAGGAAAAAGAGGGGAAGTAGCAGGTGGAACTGTAGTGGACTTGGCTTCTATTTATAATAGTAACTCTGAAAATTCATCATCAAAGCCTGCTTCACCTATGTCAGCAACTGCGCTTCTTCAGAAAGCAGCGCAAATGGGTTCCACCAGAAGCACCAACCCTTCCATTTTCAGTGGTAGTTTTTGTGTGATTAACTCACCTTCCTCACAAACTACCACCACTCTCAACAATAACAACGGTGGTGCAAATGCAAACGATCAACACTTTAGCTCATTGACGCATTCATCAAACGGTTTTGACCAACTTGTGATGCAAGCCAATGGGCAGATGCAAAGTGAGCCTGCGAAGCTGAAGCTTCATTCAAACGCTGTGGAGAACAATTTGACAAGGGATTTTCTTGGAGTCAGTGGAGGAGGAGGAGGTGGTGGTGGTGGTGGAGCTCATCATCAGTTCCTACCCCAAGAGCTTGCAAAGTTTGCTTCCATAGGCTCACCAATGGGGATGAGCCAATTCACAAGTAACCAATGA 1545 0.4576 MQMMPGDPFSLSTSMGGFTHQDQQNTNPNPKPNPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYICPEQTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTTTNLNFKSEEGGGNVMNSQHGLIAATQGLHHHQNVSGISQFGPHGFRMDFNGMEQQRPSLSLWLNQQGNPQMNNNNNSASDVGPNYMSSCSSSGLPEIVQMAHQANAALMGCSSSMVSSFGVAAGSNSSTSANLSLGKRGEVAGGTVVDLASIYNSNSENSSSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFCVINSPSSQTTTTLNNNNGGANANDQHFSSLTHSSNGFDQLVMQANGQMQSEPAKLKLHSNAVENNLTRDFLGVSGGGGGGGGGGAHHQFLPQELAKFASIGSPMGMSQFTSNQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0393 514 PANTHER ZINC FINGER PROTEIN JACKDAW 7 502 IPR033243 GO:0003700
Aed8g0393 514 MobiDBLite consensus disorder prediction 1 51 - -
Aed8g0393 514 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 502 - -
Aed8g0393 514 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Aed8g0393 514 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Aed8g0393 514 SMART c2h2final6 142 162 IPR013087 -
Aed8g0393 514 SMART c2h2final6 66 88 IPR013087 -
Aed8g0393 514 SMART c2h2final6 107 137 IPR013087 -
Aed8g0393 514 MobiDBLite consensus disorder prediction 1 27 - -
Aed8g0393 514 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Aed8g0393 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Aed8g0393 514 Gene3D Classic Zinc Finger 44 118 - -
Aed8g0393 514 Gene3D Classic Zinc Finger 121 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0393 Aed-Chr8 3238423 3241585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0393 1 273 IDZ Gene Family AT5G03150 64.983 4.20e-129 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed8g0393 zf-C2H2_jaz 7.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0393 K25870 - gmx:100801182 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0393 8 3238423 3241585 Aed8g0393 8 3238423 3241585 ECH
Aed2g1836 2 23103935 23107136 Aed8g0393 8 3238423 3241585 PCT