Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0391 ATGGGGCATAGACATTTATATAACTCATCTCCAATGTTTGAGGGTGAACCTGACCAGAACTGGAATCATATGCATACGGATCAACAATTTGTGAACCTTGGTAGGAGTACCACCTCAGACAATGGTTCTTTTATTTATCCTTTGGAAAATATGTCCATAGATAGCATATCTTTTCCATCTCATTGGAACACTGCACCAAGGTCAAACGGATATGCATCCACAAGTCTCAACATTGAAGCACCCCCTCATCAAACTGATGTATCCGGCACTTCTCATGATCATTTTCTGCATTCATCAAGTTCTGGAATGTTCTATGCAGTGCCTGAAAATTATGTACACCAGCCTTCTAATTCTAATTATGACAGACAAGCATTTTCTGTTGCTGATGGGGGTTTTATTGATCTTACAATGGGAAATGGACGAGGTCCCCACAAGCGGAAGAGCCCTGGAATTCCTCCTGTCTGTGAGAGAGGCAGTACAAGCAGATATTTTAATGCTGCAAATGCAGCTGATCGTCCTACATCTTCAGAATTGCGGCCAGAGAAGCCCAATATGGATTCTCTATATATGCCTTGGGATCATGTTAATATGACACCTCCATTTAGAGGTAGAGGCCTTTCTATACGGGGTGAGGGTCCTTTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCTAACCTGGCTAGGACCCATCTATCAAATACTCATCCACACAACTCATACCCTACTGGTCCACCAATTGACCATTCTAGCATGGCTGATCATTCAACTCAAACTTCTGGCACTTTGACAAGGGATTGGAGCCAAATGAGTATATGTCCTCCTCATGGAAGGGTGTCATCATCAGATGCAAATGCTTTTAATCACGAGGCAAGTCATTTCCTTGTTGGAAGTGGTTCTAGTAATGCTCCTGTAGATGTTGGAAGTTTTCATAATGAAATTGGAACTAGCAGAAATCCTACTGCTCCTCAAAGTTTTCATAATAATAATCTGACTCAAACTGCAAGAGGAGTTCGCAGTAACTACTCTCAAAGAGCCACTCCAGCATTTAGGGCTGCTTCAGGCTTGCGCTTGGGTCGTGTGGCACCTTCTGATGATGGATTGCATATGGTGGCTGAAAGTTACTCTTCTAGACACCCAAGGCCATTGACCACCATTGGCTGGCAGAACAATGATAGAAACGGAAGGTCAAGAATACCTAGTGATAGATATCGATCATTGGCTGCTGAGGTTGGTCTCATTGAACAATTTAACTCTGAGGAAGAATACAAGAACATGGAGGATGTTGGGACGCTGAAAGTCTGTGGACATGATTACCATGTGAGTTGCATTAGAAAGTGGTTGTCTATGAAGAAAGTATGTCCTATCTGCAAAGCTTCTGCTTTGGCTGAGGATACCAAAGACAAATAA 1416 0.4273 MGHRHLYNSSPMFEGEPDQNWNHMHTDQQFVNLGRSTTSDNGSFIYPLENMSIDSISFPSHWNTAPRSNGYASTSLNIEAPPHQTDVSGTSHDHFLHSSSSGMFYAVPENYVHQPSNSNYDRQAFSVADGGFIDLTMGNGRGPHKRKSPGIPPVCERGSTSRYFNAANAADRPTSSELRPEKPNMDSLYMPWDHVNMTPPFRGRGLSIRGEGPLRNVRSRSALDLESNLARTHLSNTHPHNSYPTGPPIDHSSMADHSTQTSGTLTRDWSQMSICPPHGRVSSSDANAFNHEASHFLVGSGSSNAPVDVGSFHNEIGTSRNPTAPQSFHNNNLTQTARGVRSNYSQRATPAFRAASGLRLGRVAPSDDGLHMVAESYSSRHPRPLTTIGWQNNDRNGRSRIPSDRYRSLAAEVGLIEQFNSEEEYKNMEDVGTLKVCGHDYHVSCIRKWLSMKKVCPICKASALAEDTKDK 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0391 471 Pfam RING-H2 zinc finger domain 434 460 IPR024766 GO:0008270
Aed8g0391 471 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 423 467 - -
Aed8g0391 471 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 423 467 IPR045191 GO:0061630
Aed8g0391 471 MobiDBLite consensus disorder prediction 234 281 - -
Aed8g0391 471 ProSiteProfiles Zinc finger RING-type profile. 437 460 IPR001841 -
Aed8g0391 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 418 465 IPR013083 -
Aed8g0391 471 SUPERFAMILY RING/U-box 425 463 - -
Aed8g0391 471 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 422 IPR045191 GO:0061630
Aed8g0391 471 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0391 Aed-Chr8 3207121 3214824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0391 434 470 C3H Transcription Factor Family AT2G37150 62.162 2.96e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0391 - - gmx:547939 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0391 8 3207121 3214824 Aed8g0391 8 3207121 3214824 ECH
Aed2g1833 2 23080481 23088700 Aed8g0391 8 3207121 3214824 PCT