Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0373 ATGTCCGATGTTCCGGCGAGTCCAGGCGGCGGCGGAAGCCACGAGAGCGGTGAACACAGTCCCCGCTCCAATTTCCGCGAGCAGGACCGCTTCCTCCCCATCGCCAACATCAGCCGCATCATGAAGAAAGCGCTTCCTCCCAACGGGAAAATCGCTAAGGACGCCAAGGAAACCGTGCAGGAGTGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAAGCGAGTGATAAGTGCCAGAGAGAGAAGAGAAAGACCATCAACGGCGACGATTTGCTTTGGGCAATGGCCACTTTAGGTTTCGAGGAGTATATCGATCCTCTCAAGGTTTACCTCGCCGCTTACAGAGAGGGTGATTCCAAGGGTTCGGCTAAGGGTGGAGATGCATCTGCTAAGAGAGACGTTTATCCAAGTCCTAATGCCCAGCTTGCTCATCAGGGTTCTTTCCCACAAGGCGTTAATTATACAAATTCTCAGCCCCAGGCTCAACATATGATAGTTCCCATGCAAGGCCAAGAGTAG 519 0.5337 MSDVPASPGGGGSHESGEHSPRSNFREQDRFLPIANISRIMKKALPPNGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEYIDPLKVYLAAYREGDSKGSAKGGDASAKRDVYPSPNAQLAHQGSFPQGVNYTNSQPQAQHMIVPMQGQE 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0373 172 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Aed8g0373 172 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Aed8g0373 172 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Aed8g0373 172 Gene3D Histone, subunit A 18 156 IPR009072 GO:0046982
Aed8g0373 172 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 157 - -
Aed8g0373 172 MobiDBLite consensus disorder prediction 140 172 - -
Aed8g0373 172 SUPERFAMILY Histone-fold 28 127 IPR009072 GO:0046982
Aed8g0373 172 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aed8g0373 172 MobiDBLite consensus disorder prediction 120 172 - -
Aed8g0373 172 MobiDBLite consensus disorder prediction 1 28 - -
Aed8g0373 172 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Aed8g0373 172 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0373 Aed-Chr8 3092024 3094961 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0373 7 172 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.988 3.86e-82 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aed8g0373 CBFD_NFYB_HMF 6.4e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0373 K08065 - gmx:100791435 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0024 4 186122 196835 Aed8g0373 8 3092024 3094961 PCT