Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0370 ATGGCCGCTGCAGCACGTCCTCTCGTCACCGTGCAGGCCCTCGAGGGCGACATGGCCACCGACGCCGCCGCTACCGTCCCCATCCCTGACGTCATGAAGTCCTCAATCCGCCCCGACATCGTTAACTTCGTCCACTCCAACATCTCCAATAACAGCCGCCAGCCCTATGCCGTCAGCCGCCGTGCCGGTCACCAGACCTCCGCCGAGTCCTGGGGAACCGGCCGCGCCGTCTCCCGTATCCCTCGTGTCCCTGGAGGCGGAACCCACCGCGCCGGCCAGGGAGCCTTCGGAAACATGTGCCGAGGAGGTCGCATGTTCGCCCCAACCAAGATCTGGCGCCGCTGGCACCGCAAGATAAATGTTAACCAGAAGCGCTACGCCATCGTCTCCGCAATCGCCGCCTCGGCAATCCCATCCCTTGTCCTCGCCCGTGGTCACCGCATCGAGTCCGTCCCGGAGCTCCCCCTAGTCGTGAGCGACTCCGCGGAAGGCGTCGAGAAAACAAAGGAAGCAATCAAAGTCCTAAAACAGATCGGAGCCTTCCCCGACGCAGAGAAAGCCAAAGACTCCCACAGCATTCGCCCCGGAAAGGGAAAGATGCGTAACCGCCGCTACATCTCTCGCAGGGGCCCACTCGTAGTGTACGGAACCGAGGGCGCGAAAGCCGTTAAGGCCTTCCGTAACGTCCCCGGCGTGGAGGTTGCCAACGTGGAACGTCTCAACCTTTTGAAGCTCGCTCCAGGTGGACACCTCGGGAGGTTCGTGATTTGGACTAAGAGCGCTTTTGAGAAGCTGGACTCTATTTATGGTTCGTTTGACAAGCCCTCTGAGAAGAAGAAGGGCTACGTGCTGCCCAGGCCTAAGATGGTGAACTCTGATCTTGCTAGAATTATTAATTCTGATGAGGTGCAGTCCGTTGTGAGGCCCATTAAGAAGGACGTGAAGAGAGCTACTCTTAAGAAGAACCCTCTTAAGAATCTCAACGCTATGCTCAAGCTCAATCCTTATGCTAAGACTGCCAAGAGGATGTCGCTCCTCGCCGAGGCTCAGCGCATTAAGGCCAAGAAGGAGAAGCTCGACAAGAAGAGGAAGACTGTCTCTAAGGAGGAAGCTACTGCCGTCAAGGCTGCCGGGAAAGCATGGTATCACACCATGGTGTCAGATTCTGATTATACAGAGTTCGACGTCTTTTCTAAGTGGTTGGGTGTTTCACAGTAA 1218 0.5706 MAAAARPLVTVQALEGDMATDAAATVPIPDVMKSSIRPDIVNFVHSNISNNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAIVSAIAASAIPSLVLARGHRIESVPELPLVVSDSAEGVEKTKEAIKVLKQIGAFPDAEKAKDSHSIRPGKGKMRNRRYISRRGPLVVYGTEGAKAVKAFRNVPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKKGYVLPRPKMVNSDLARIINSDEVQSVVRPIKKDVKRATLKKNPLKNLNAMLKLNPYAKTAKRMSLLAEAQRIKAKKEKLDKKRKTVSKEEATAVKAAGKAWYHTMVSDSDYTEFDVFSKWLGVSQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0370 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Aed8g0370 405 MobiDBLite consensus disorder prediction 55 95 - -
Aed8g0370 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Aed8g0370 405 MobiDBLite consensus disorder prediction 55 73 - -
Aed8g0370 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Aed8g0370 405 PANTHER BNAC03G35890D PROTEIN 2 405 - -
Aed8g0370 405 SUPERFAMILY Ribosomal protein L4 20 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Aed8g0370 405 Coils Coil 342 372 - -
Aed8g0370 405 Pfam Ribosomal protein L4/L1 family 27 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Aed8g0370 405 PANTHER 60S RIBOSOMAL PROTEIN L4 2 405 IPR045240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0370 Aed-Chr8 3058806 3061456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0370 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 83.911 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0370 K02930 - gmx:100779764 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0026 4 216964 218844 Aed8g0370 8 3058806 3061456 PCT