Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0369 ATGAACTCTACCAACAACACTTTGAATTCTCAGTCAATGGCAGCAGCAGTATCAGCTCCAGCAGCAACGAGTGATGGGTCTGGGAAGAAGGTAAGAAAGCCATACACCATAACCAAGTCCAGGGAGAGTTGGACTGAGGAAGAGCATGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGGGATTGGAAGAAAATTGAAGATTTTGTAGGTTCCAAGACAGTTATTCAGATTCGAAGCCATGCCCAGAAATACTTCTTGAAAGTTCAAAAGAATGGGACTGTGGCACATGTGCCACCTCCCCGTCCAAAGCGCAAAGCTTCTCATCCATACCCGCAAAAGGCATCAAAAAATGTTTTGGTGCCACTACCAGCTTCCATTGGTTATGCTTCTTCAACAAACACCCTTGCACCTGGGTTCGCCACATGGGATGAAACATCCCTGCTTATGAATGCCAGAGCTGGTAAATCCATGACATGTCAGGATGAATTCAACAATCTTCGTGGAAATGAAGGCATGCATACTTCTTTTTATTGTTCTGATATTGGATCAAAGGGGATAACACAGATTACCAACAGCAATGTTGGAAACTCTACTAGAACACTACCGACATCTGAGATACCAAAGCAAGGGAAACAAGCTCCGGTGCTTCATGGTTTGCCGGATTTTGCTGAAGTTTATAGTTTCATTGGAAGTGTGTTTGATCCAGATACAAACGACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTTGAACCCATCAAGAATGTATTGTCAACATATGATGCCAATACCGTGGCAGCAGGAATTGATGTCAAGACAAATGATCTATCATGTCAAACCGCTTAA 912 0.4254 MNSTNNTLNSQSMAAAVSAPAATSDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKASHPYPQKASKNVLVPLPASIGYASSTNTLAPGFATWDETSLLMNARAGKSMTCQDEFNNLRGNEGMHTSFYCSDIGSKGITQITNSNVGNSTRTLPTSEIPKQGKQAPVLHGLPDFAEVYSFIGSVFDPDTNDHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFEPIKNVLSTYDANTVAAGIDVKTNDLSCQTA 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0369 303 PANTHER PROTEIN REVEILLE 8 10 294 - -
Aed8g0369 303 PANTHER SWI/SNF COMPLEX-RELATED 10 294 - -
Aed8g0369 303 ProSiteProfiles SANT domain profile. 39 92 IPR017884 -
Aed8g0369 303 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 39 88 IPR006447 GO:0003677
Aed8g0369 303 MobiDBLite consensus disorder prediction 1 18 - -
Aed8g0369 303 SMART sant 40 88 IPR001005 -
Aed8g0369 303 CDD SANT 43 86 IPR001005 -
Aed8g0369 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 90 IPR017930 -
Aed8g0369 303 Pfam Myb-like DNA-binding domain 41 86 IPR001005 -
Aed8g0369 303 MobiDBLite consensus disorder prediction 94 113 - -
Aed8g0369 303 Gene3D - 44 91 - -
Aed8g0369 303 MobiDBLite consensus disorder prediction 1 34 - -
Aed8g0369 303 ProSiteProfiles Myb-like domain profile. 36 86 IPR001005 -
Aed8g0369 303 SUPERFAMILY Homeodomain-like 35 91 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0369 Aed-Chr8 3051275 3057472 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed8g0369 Myb_DNA-binding 4.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0369 - - gmx:778050 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0027 4 220792 222612 Aed8g0369 8 3051275 3057472 PCT