Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0357 ATGGAAGAAACAACATCTACCACCATCATCATGTCTGCACTCTGCAGCCTCACTCAATCCCAATTCTCAGATCTCACACACTCCATTCTCTCCGCCACCAACCACCATCATCGCCGCCTCTCCTCCCTCCTTTCTTCTCCAACGCTATTCTCTCTAACCCTTCACCATCTTCACACTCTCTCCCTCCCCCAGAAGACCCTCCTCATCGCCCGTCACGTCCTCTCCTCCCTCCACCTCCTCGCCGCCACGTCACCGCCTCTTTCCACCACCACGCGGCAGCGCGACCTCGACGCCGCGCTGCTCCTCCTCCTCCTCTGCGAAACGCACAACCACAACCCGCAGGCCCTCGAGGCACCCTTTTCTGAATGGAGAACAAACCTGAGCAGGGTCTTCTCCGATTCGTTGTTAACTCTTTCCTTTGCTGCACCCGTTGGGGCGGCGTGCGGTACTATAATTCCCTTCGTTGAGACGGTGTCGCGGTGCTGGAGGCTCGTCGGCGCGATGGACTGCAGCGGAGGGAAGGAGGTTGGTGAGGTGGCGGCTTCGGCGGCGACGGTGGTGGCGCTGCCGTCGGTGGAGGTGAGGGCCGGTGGGAGAGAGTGCGTTATATGCAAAGAGGAGATGGGAGTAGGGAGGGACGTGTGTGAGTTGCCATGTCAGCACTTGTTTCATTGGATGTGTATTCTTCCCTGGCTCGGGAAGAGGAACACGTGTCCTTGCTGCAGGTTCCGCTTACCGTCCGATGATGTCTTCGGAGAGATCCAACGGCTCTGGGAAGTCTTGGTTAGAATGGCTGTAAAGGATTCATATTGA 813 0.5769 MEETTSTTIIMSALCSLTQSQFSDLTHSILSATNHHHRRLSSLLSSPTLFSLTLHHLHTLSLPQKTLLIARHVLSSLHLLAATSPPLSTTTRQRDLDAALLLLLLCETHNHNPQALEAPFSEWRTNLSRVFSDSLLTLSFAAPVGAACGTIIPFVETVSRCWRLVGAMDCSGGKEVGEVAASAATVVALPSVEVRAGGRECVICKEEMGVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVRMAVKDSY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0357 270 Pfam Ring finger domain 200 242 IPR001841 -
Aed8g0357 270 SMART ring_2 201 241 IPR001841 -
Aed8g0357 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 248 IPR013083 -
Aed8g0357 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 4 265 - -
Aed8g0357 270 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Aed8g0357 270 SUPERFAMILY RING/U-box 197 247 - -
Aed8g0357 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0357 Aed-Chr8 2937325 2938137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0357 3 263 C3H Transcription Factor Family AT5G02750 51.449 2.21e-81 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0357 - - gmx:100810879 422.165