Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0346 ATGGGTAACGCTCATCATCATGGACACCGGCATCGCAAACACGGTAACTCCGCTCCTCCCAACACGGTTCCTCCACCCCATAAATACAATCCTCAGCCACCACCGTTTCCAACCAACACCAACATGCTCTCTCTTCCTTACACTCACGTCGACGCCACTCTCCGCGCCCTCGCCGCCCAAGCCGAGGGCTTCGGTCGCTTCGCCATCGGCGGCCTCCACGGTTCCATTCACCACGTTTCCGGCACCATTCAACTCTCCTCGTACTTGAACGTGTCGTCTCACAAGACAATCGACGGTCGTGGCCATAGGATTAAACTCAGCGGTAAAGGCTTGCGCCTGAAGGACTGCGAGCATGTGATAATTTGCAATCTCGAGTTTGAAGGAGGCAGAGGACATGATGTCGACGCCATTCAGATCAAACCTAATTCCAAACACATATGGATAGACCGTTGCTCCCTCAGTGATTTCGATGATGGCCTCATAGATATCACCCGAGAAAGCACAGACATTACTATTTCAAGGTGTCACTTCTCTCAGCATGACAAAGCCATGCTCATTGGGGCTGACCCTTCTCATGTTAGCGATAGGTGCATGAGGGTGACTATACACCATTGTTTCTTCAATGGGACTCGACAGAGGCAACCTCGTGTTAGGTTTGCAAAAGTGCATCTCTACAATAACTATATCAGAAACTGGGGCATATATGCTGTTTGTGCTAGTGTGGAATCCCAGATATTCTCGCAACATAATATCTATGAAGCAGGACAAAAGAAGCTGGCATTTAAGTACCTTACTGAGAAGGCAGGAGACAAGGAAGAGGGAGGAACTGGTATCATAAGGTCTGAAGGAGACATATTCTTAAATGGTGCTAAATCAGGGTTAATGACTGAGGATGTTGGGTGCAACATGTTTCACCCCAGTGAACACTATTCCTCTTGGACAGTGGAAGCCCCTACAGAGGATCTCAAACAGATTCTTCATCACTGCACTGGATGGCAATCTCTTGCTAGGCCAACAGATCAAACAGTATGA 1032 0.4855 MGNAHHHGHRHRKHGNSAPPNTVPPPHKYNPQPPPFPTNTNMLSLPYTHVDATLRALAAQAEGFGRFAIGGLHGSIHHVSGTIQLSSYLNVSSHKTIDGRGHRIKLSGKGLRLKDCEHVIICNLEFEGGRGHDVDAIQIKPNSKHIWIDRCSLSDFDDGLIDITRESTDITISRCHFSQHDKAMLIGADPSHVSDRCMRVTIHHCFFNGTRQRQPRVRFAKVHLYNNYIRNWGIYAVCASVESQIFSQHNIYEAGQKKLAFKYLTEKAGDKEEGGTGIIRSEGDIFLNGAKSGLMTEDVGCNMFHPSEHYSSWTVEAPTEDLKQILHHCTGWQSLARPTDQTV 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0346 343 SMART amb_all 51 258 IPR002022 -
Aed8g0346 343 Pfam Pectate lyase 88 251 IPR002022 -
Aed8g0346 343 MobiDBLite consensus disorder prediction 1 41 - -
Aed8g0346 343 SUPERFAMILY Pectin lyase-like 60 337 IPR011050 -
Aed8g0346 343 Gene3D - 47 327 IPR012334 -
Aed8g0346 343 MobiDBLite consensus disorder prediction 1 16 - -
Aed8g0346 343 MobiDBLite consensus disorder prediction 19 40 - -
Aed8g0346 343 PANTHER PECTATE LYASE 39 79 - -
Aed8g0346 343 PANTHER PECTATE LYASE 76 337 - -
Aed8g0346 343 PANTHER PECTATE LYASE 18-RELATED 39 79 IPR045032 GO:0030570
Aed8g0346 343 PANTHER PECTATE LYASE 18-RELATED 76 337 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0346 Aed-Chr8 2862380 2865436 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0346 76 343 Polysaccharide Lyase AT3G55140 75.373 2.89e-156 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0346 K01728 - gmx:100814368 619.002