Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0337 ATGGTAACCATTCTGAAGAGACAGAGAGAGAACGAGTCCGAGGAGAGCATAGACTTGGCGAAAAGTCTGATCCTACTCTCGCGTTTTCAACAAATAAGCAAGCCAAGCTTGAATAAATATTCTCCTCCAGTGGAGTTCGAGTGCAAGACGTGTAACCGCAAGTTCTCGTCTTTTCAAGCCCTGGGAGGCCACAGAGCGAGCCACAAGAAGCCCAAGTTCGAAGAACAACTCAAAGAAGAGGCAAACAAAGCACCCAAAATGCACGAATGTTCCATTTGCGGCCAGGAATTCACTTTGGGCCAGGCATTGGGTGGACACATGAGAAAGCACAAGAATAACAATAACAATGAAAAACCGTTGTTGTTTAATAATCCTTCTATTTCTACTAACCAGTTAGCAATTGCCAAAGCCCCAGTTCTGAAGCGATCGAATAGCAAGAGGGTCATGTGCTTGGAGTTGGACCTTAACTTAACGCCTTTGGAGAATGACTTGAAGTTCTTGTTCGGAAACAAGGCTCCTAAAGTCGATCTTGCTTTGTAG 540 0.4481 MVTILKRQRENESEESIDLAKSLILLSRFQQISKPSLNKYSPPVEFECKTCNRKFSSFQALGGHRASHKKPKFEEQLKEEANKAPKMHECSICGQEFTLGQALGGHMRKHKNNNNNEKPLLFNNPSISTNQLAIAKAPVLKRSNSKRVMCLELDLNLTPLENDLKFLFGNKAPKVDLAL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0337 179 Gene3D Classic Zinc Finger 44 110 - -
Aed8g0337 179 Pfam C2H2-type zinc finger 46 71 - -
Aed8g0337 179 Pfam C2H2-type zinc finger 88 111 - -
Aed8g0337 179 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Aed8g0337 179 PANTHER ZINC FINGER PROTEIN ZAT5 5 174 - -
Aed8g0337 179 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 5 174 - -
Aed8g0337 179 SMART c2h2final6 88 110 IPR013087 -
Aed8g0337 179 SMART c2h2final6 46 68 IPR013087 -
Aed8g0337 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 119 IPR013087 -
Aed8g0337 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Aed8g0337 179 SUPERFAMILY beta-beta-alpha zinc fingers 46 110 IPR036236 -
Aed8g0337 179 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0337 Aed-Chr8 2798010 2798549 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0337 5 177 C2H2 Transcription Factor Family AT2G37430 47.568 5.73e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed8g0337 zf-C2H2_6 2.2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0337 - - gmx:100778467 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0071 4 452968 453474 Aed8g0337 8 2798010 2798549 PCT