Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0336 ATGATGAAGAGACAGAGGGAAAATGAAGGAACAACCTTAGAAAGCTGGGAGATGCAAAATTGTACTACTTCAACCACAACATCCCCTGAAGTGTTTGAGTGCAAAACGTGCAACCGAAGATTCACTTCGTTTCAAGCACTGGGTGGCCACAGGGCTAGTCACAACAAGAGGGTCAAGCTTCAATATTGTGAACAACAACAACGAAGAAATGAACCCAACAACGAGGTTTTCTCTTCCATAAACCAGGTTGTCGCGAAAGTTTCGGTTCTCAAGAGATCGTGTAATGACAAGGTTTTCTGCTTGGACCTCAATTTAACTCCTGTCGAGAATGACTTAAAGTTGTTGTTGTTCGGGAAATTGTCACCCAAAGTTCATCTTTCTTCCTTCTGA 390 0.4256 MMKRQRENEGTTLESWEMQNCTTSTTTSPEVFECKTCNRRFTSFQALGGHRASHNKRVKLQYCEQQQRRNEPNNEVFSSINQVVAKVSVLKRSCNDKVFCLDLNLTPVENDLKLLLFGKLSPKVHLSSF 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0336 129 MobiDBLite consensus disorder prediction 1 24 - -
Aed8g0336 129 PANTHER ZINC FINGER PROTEIN ZAT5 72 123 - -
Aed8g0336 129 PANTHER ZINC FINGER PROTEIN ZAT5 16 66 - -
Aed8g0336 129 SUPERFAMILY beta-beta-alpha zinc fingers 28 57 IPR036236 -
Aed8g0336 129 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Aed8g0336 129 Gene3D Classic Zinc Finger 7 89 - -
Aed8g0336 129 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Aed8g0336 129 Pfam C2H2-type zinc finger 31 56 - -
Aed8g0336 129 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 72 123 - -
Aed8g0336 129 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 16 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0336 Aed-Chr8 2795425 2795814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0336 12 126 C2H2 Transcription Factor Family AT3G53600 37.931 4.50e-19 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed8g0336 zf-C2H2_6 6.8e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0336 - - vun:114190724 128.642