Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0335 ATGAAGAGACAGAGAGATGGAGTAGTAGAGAACATAGATTTGGCAAATTGTCTAATGTTGCTCTCTCACACTAAAGAAATCAAACCCCAAAAACCTCTGGGCCCTGAAGAATTCGAGTGTATGACATGCAACCGCAAATTCTCTTCGTTTCAGGCCCTCGGTGGCCACAGGGCCAGCCACAAGAAGCCCAAACCAGACGTTAAAGAAGAGAGCAAAATTTTGATGTTGGACAAAAAGCCCAAAAAACACGAGTGCTCCATTTGTGGTAAGGTATTCACTTTGGGCCAGGCACTGGGAGGACACATGAAAACACACAGAATTGTCGTTGACCAAGGACTCTCTTCAATAAAGCATCATGTTGTAGTAAAAGTCCCTGTGCTTAAAAGGTTGAATAGTACGAGGCTTATGTGCTTGGACTTGAACTTGACTCCTCTGCAGAATGACTTGAAGTTATTGTTTGGAGACAAGGCACCCAAAGTTGATTCCTTCGTCTGA 495 0.4384 MKRQRDGVVENIDLANCLMLLSHTKEIKPQKPLGPEEFECMTCNRKFSSFQALGGHRASHKKPKPDVKEESKILMLDKKPKKHECSICGKVFTLGQALGGHMKTHRIVVDQGLSSIKHHVVVKVPVLKRLNSTRLMCLDLNLTPLQNDLKLLFGDKAPKVDSFV 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0335 164 Gene3D Classic Zinc Finger 36 105 - -
Aed8g0335 164 SUPERFAMILY beta-beta-alpha zinc fingers 38 105 IPR036236 -
Aed8g0335 164 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Aed8g0335 164 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 159 - -
Aed8g0335 164 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Aed8g0335 164 PANTHER ZINC FINGER PROTEIN ZAT5 1 159 - -
Aed8g0335 164 SMART c2h2final6 38 60 IPR013087 -
Aed8g0335 164 SMART c2h2final6 83 105 IPR013087 -
Aed8g0335 164 Pfam C2H2-type zinc finger 38 63 - -
Aed8g0335 164 Pfam C2H2-type zinc finger 83 107 - -
Aed8g0335 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Aed8g0335 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0335 Aed-Chr8 2793778 2794272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0335 1 161 C2H2 Transcription Factor Family AT2G37430 48.851 2.80e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed8g0335 zf-C2H2_6 1.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0335 - - gmx:100793243 260.381