Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0318 ATGCTCCACTGCTGCAATAATTTTGAATTCCAAATGGACGACGTCGACGAAGAATACCCAATTCCCGTCTCAAAGAAACCCTCCACCGACGACGACAACGAAAACAGGCAAAACGATGAGATCATGGAACTGCTATGGCAAAACGGCCAGGTCGTGATGCAAAGCCAAACCCAACGACCCTTCAGAAAACCTCCTCCGCCGGGCGCCAACGGCGGCGACGGTGTTATTCCGGCGAGGGAGATTCGATCCTCCGAAGCAGAGAACTACAATAACCAACACTTGTTCATGAAAGAAGACGAAATGGCTTCGTGGCTGCACTATCCAATCCACGAAGATCCTCCTCCCTTCGATCACCACGATTTCTGCGCCGACATCCTCTACCCGCCGCCAAATGCCACCGCCAGCCAGAATCACAACGGCGCCGCCATGCAGTCCTCCGTCCGCACCACAGAGCTCCGGCATCCGGCTCCTCGGCCTCCGATTCCGCAGTCGAGGCGGCTGGAGCAGGCGTCGAACAGGATGCAGAATTTCGCGCACTTCGCCAAGCACGGCAATGCGTCGTCGAGTTCGAAGGCCGCGGCGGCGGAGCATCCGACGGTGGTGGATTCGTACGACACGCCAGTCGCGATGGTGGAGCACGCGGAAACCGGCCGCGCGAGCGTCAGCGCCGCCGCTGCTAAAACCGCGGCGTCGGACGGCAGGAGGGAGACAACGACGTGCGACGTGACGGTGACATCGTCGCCCGGCGGTTCGAGCGGGAGCGACGAACCGGTCCAAAGAGAACCGGCGGTGGACCGGAAAAGGAAGGGAAGAGAATTACCGGAGGAATCGGAGTTTCAGAGCGAGGACGTTGATTTTGATTCTCCGGAAGCTAAAAAACAAGCCCGTGGTTCTATATCTACCAAGAGATCTCGGGCTGCAGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGAGATAGAATTAATGAAAAGATGAAAGCCTTGCAAGAACTTATACCTCGGTGCAACAAGTCAGACAAAGCTTCAATGCTGGATGAAGCAATTGAGTACTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATGCAGCAGTATATGCCCCCAATGGGAATGGGAATTGGTATGGGCATGGAAATGGGAATGGGAATGGGAATGAACAGACCGGTAATGCCATTTCCCAATATGTTAGCTAGTTCGACTTTGCCAGCAGCAGCAACTGCAGCTGCAGCTGCTCATTTGGGACCAAGGTTTCCTATGCCTCCTTTCCATATTCCTGCACCCGATTCGTCCAGAATGCAAGGAGCAAATCAGCCAAATAATAATATGCTTAACTCACTTGGTACACTAGATTCAGATCAATCACGTATCCCAAACTTCACTGATCCTTATCAACAGTACCTTGGTCTCCAACAGGCACAGTTACAACTAATGCAGGCAATGAACCAACCAAATGTCAGCAAGCCTAGTACCAGTAGAGGTCAAGAGAATCCAGAAAAGCATCAGTCAGACGAAACATGA 1557 0.5279 MLHCCNNFEFQMDDVDEEYPIPVSKKPSTDDDNENRQNDEIMELLWQNGQVVMQSQTQRPFRKPPPPGANGGDGVIPAREIRSSEAENYNNQHLFMKEDEMASWLHYPIHEDPPPFDHHDFCADILYPPPNATASQNHNGAAMQSSVRTTELRHPAPRPPIPQSRRLEQASNRMQNFAHFAKHGNASSSSKAAAAEHPTVVDSYDTPVAMVEHAETGRASVSAAAAKTAASDGRRETTTCDVTVTSSPGGSSGSDEPVQREPAVDRKRKGRELPEESEFQSEDVDFDSPEAKKQARGSISTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGMQQYMPPMGMGIGMGMEMGMGMGMNRPVMPFPNMLASSTLPAAATAAAAAHLGPRFPMPPFHIPAPDSSRMQGANQPNNNMLNSLGTLDSDQSRIPNFTDPYQQYLGLQQAQLQLMQAMNQPNVSKPSTSRGQENPEKHQSDET 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0318 518 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 354 IPR011598 GO:0046983
Aed8g0318 518 MobiDBLite consensus disorder prediction 149 168 - -
Aed8g0318 518 Gene3D - 300 363 IPR036638 GO:0046983
Aed8g0318 518 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 2 517 - -
Aed8g0318 518 MobiDBLite consensus disorder prediction 488 505 - -
Aed8g0318 518 MobiDBLite consensus disorder prediction 18 35 - -
Aed8g0318 518 Coils Coil 311 331 - -
Aed8g0318 518 Pfam Helix-loop-helix DNA-binding domain 309 355 IPR011598 GO:0046983
Aed8g0318 518 MobiDBLite consensus disorder prediction 488 518 - -
Aed8g0318 518 MobiDBLite consensus disorder prediction 216 317 - -
Aed8g0318 518 MobiDBLite consensus disorder prediction 16 35 - -
Aed8g0318 518 CDD bHLH_AtPIF_like 305 368 - -
Aed8g0318 518 MobiDBLite consensus disorder prediction 232 254 - -
Aed8g0318 518 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 383 IPR036638 GO:0046983
Aed8g0318 518 MobiDBLite consensus disorder prediction 53 73 - -
Aed8g0318 518 MobiDBLite consensus disorder prediction 440 473 - -
Aed8g0318 518 MobiDBLite consensus disorder prediction 443 473 - -
Aed8g0318 518 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 2 517 IPR031066 -
Aed8g0318 518 MobiDBLite consensus disorder prediction 259 277 - -
Aed8g0318 518 SMART finulus 311 360 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0318 Aed-Chr8 2634006 2640947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0318 37 360 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 40.290 8.23e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed8g0318 HLH 6.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0318 - - gmx:100788491 712.99