Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0306 ATGGCGGCGTCGCGGAGGCTCCGGGACCTGCAGTCCCTCACGGGGAACAAGATCTGCGTTGACTGCTCCCAGAAGAATCCTCAGTGGGCTTCCGTCTCGTACGGCGTCTTCATGTGCCTGGAGTGCTCCGGCAAGCACCGCGGCCTTGGTGTCCACATCTCCTTCGTCCGATCCGTCACCATGGACTCCTGGTCCGACATCCAGATCAAGAAAATGGAAGCCGGCGGCAACGACAAGCTCAACGTTTTCCTCGCACACTACTCCATCCCCAAGGATACCGACATCGTCACCAAGTACAACACTAGCGCCGCCGCTATTTACCGCGACCGGATCCAGGCACTCGCGGAGGGCCGCCCCTGGCGTGATCCGCCTATTGTCAAGGAAAATCTCTCCTCCTCATCCTCCTCGGCCGGCGCCGGTAAGGGGAAGCCGCCGAGGAACGATGCGGGATGGGATGATTGGGACAACGAGGCCAGTCCCCGGAGCAGGTCGACCGGGGATTTCAGGAGTTTGAACGGGGGCGGCGGCGCGCCGGCGAGGTCCAGGTCGACCGAGGATATCTACACGCGGACGCAGCTCGAGGCCTCCGCCGCGAACAAGGAGAGCTTCTTCTCGCGGAAGATTGCGGAGAACGAGTCGCGCCCGGAGGGGCTGCCCCCCTCCCAGGGAGGGAAGTATGTCGGGTTTGGATCCACTCCGCCGCCGCATCCTCAGCGGAGGAATGATGGGCAAAACGATTATTTCTCCGTCGTTTCGCAGGGGATTGGGAAGTTGTCTTTGGTTGCTGCCTCTGCTGCTCAGTCTGCTGCCAAGGAGATCACTTCTAAGGTCAAGGAAGGTGGTTATGATCATAAGGTCAATGAAACTGTCACTGTGGTTTCTCAAAAGACATCAGAGATTGGACATAGGACTTGGGGCATAATGAAAGGAGTCATGGCTATGGCTTCCCAGAAGATTGAGGAGTACACTAAAGATGATCCAAACTGGCAACGGAATGAGAATGATAGAAATGGTTATTATCAGGATTTTAATCAGGAGAACAAAGGCGTGAATTCTTCTACTGGAAGAGAACAATCTTCATCAGGGCAATATAAAACTCAAAGCTCAAGCTCTTGGGATGATTGGGACCACAAAGATAGCAGCAGGAAGGAAGAACCAGCTAAAGGATCAACTCATTCATCAGGGGGGCAATTTAGTACCCACAACTCAAGCTCTTGGGATGATTGGGAACACAGAGATTCTAGGAAGGAAGAACCAGCTAAAGGATCAGCTCCCCATAATAATGATGATTGGGCTGGTTGGGATAATGTCAAAGATGATGGATTTGATCATTTTAATGAAGCTGCATCTAATAGGAAAGGTGTTGGTCATAATGGGAAATCAGATGGCACTTGGACAGAGGGAGGCTTTCTCTAA 1416 0.5339 MAASRRLRDLQSLTGNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSDIQIKKMEAGGNDKLNVFLAHYSIPKDTDIVTKYNTSAAAIYRDRIQALAEGRPWRDPPIVKENLSSSSSSAGAGKGKPPRNDAGWDDWDNEASPRSRSTGDFRSLNGGGGAPARSRSTEDIYTRTQLEASAANKESFFSRKIAENESRPEGLPPSQGGKYVGFGSTPPPHPQRRNDGQNDYFSVVSQGIGKLSLVAASAAQSAAKEITSKVKEGGYDHKVNETVTVVSQKTSEIGHRTWGIMKGVMAMASQKIEEYTKDDPNWQRNENDRNGYYQDFNQENKGVNSSTGREQSSSGQYKTQSSSSWDDWDHKDSSRKEEPAKGSTHSSGGQFSTHNSSSWDDWEHRDSRKEEPAKGSAPHNNDDWAGWDNVKDDGFDHFNEAASNRKGVGHNGKSDGTWTEGGFL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0306 471 Pfam Putative GTPase activating protein for Arf 5 94 IPR001164 GO:0005096
Aed8g0306 471 MobiDBLite consensus disorder prediction 432 447 - -
Aed8g0306 471 CDD ArfGap_ArfGap1 3 117 - -
Aed8g0306 471 Gene3D Arf GTPase activating protein 1 134 IPR038508 -
Aed8g0306 471 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 389 471 - -
Aed8g0306 471 MobiDBLite consensus disorder prediction 204 246 - -
Aed8g0306 471 SUPERFAMILY ArfGap/RecO-like zinc finger 5 115 IPR037278 -
Aed8g0306 471 MobiDBLite consensus disorder prediction 390 404 - -
Aed8g0306 471 MobiDBLite consensus disorder prediction 371 389 - -
Aed8g0306 471 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 392 - -
Aed8g0306 471 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Aed8g0306 471 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Aed8g0306 471 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Aed8g0306 471 MobiDBLite consensus disorder prediction 333 370 - -
Aed8g0306 471 MobiDBLite consensus disorder prediction 146 162 - -
Aed8g0306 471 MobiDBLite consensus disorder prediction 405 424 - -
Aed8g0306 471 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 389 471 IPR044519 GO:0005096|GO:0016192
Aed8g0306 471 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 392 IPR044519 GO:0005096|GO:0016192
Aed8g0306 471 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Aed8g0306 471 MobiDBLite consensus disorder prediction 323 471 - -
Aed8g0306 471 MobiDBLite consensus disorder prediction 118 186 - -
Aed8g0306 471 SMART arf_gap_3 4 120 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0306 Aed-Chr8 2575239 2583249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0306 5 81 C2H2 Transcription Factor Family AT4G21160 52.564 3.68e-21 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0306 K12492 - gmx:100806519 828.55