Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0275 ATGTCTTTCTTTCCAGGGATGGAAACCATTGGTTCTGTGGATGACCTGTTGGATTTTTCATCAGACATAGGTGAGGAAGACGATGATGAAGACAAACCTAGGAAAGCCTGTCCTTCACTTAACACAAAATGCGCTGATCCATCATTGTTTAACCCATTGGTCCCGGATGATCCAAACCATTCATTTCTTGAGTATGCAGAAGAAGAGGAGCTTGAATGGCTATCGAACAAAGATGCATTTCCTTCTGTTGAAACGTTTGTTGACCTATCATCTATTCAACCTGGCACAACCAAGAACCAAAAAACAGTCCCAGTACTTGAGTGCAGCACAGGAAGTAGCAACAGTAATATCAGCAATAACAGTATTTCCCTCCTAAACAGTTGTGATCACCTTAAGGTCCCAGTCCGTGCACGGAGCAAGAGTCGCAGTAGGCGTTGCCCTGGCATTGCTGAGAACTATAGTCAGCAAATATGGTGGAGACAACCAAGTCATGAAACTTCCAAAGCAGATGAAGGAATGAAAATCTCACCCATTGGGAGGAAATGCCAGCACTGTGGAGCTGAAAAAACTCCACAATGGCGGGCAGGCCCCCTTGGGCCGAAAACACTTTGTAATGCATGTGGGGTTAGGTTTAAGTCTGGGCGACTTGTGCCTGAATACCGTCCTGCAAGTAGCCCAACTTTTCAAAGTGATTTGCATTCTAATTCCCACCGGAAGATAGTAGAAATGAGGAGGCAGAAGCAAATGTGA 750 0.4507 MSFFPGMETIGSVDDLLDFSSDIGEEDDDEDKPRKACPSLNTKCADPSLFNPLVPDDPNHSFLEYAEEEELEWLSNKDAFPSVETFVDLSSIQPGTTKNQKTVPVLECSTGSSNSNISNNSISLLNSCDHLKVPVRARSKSRSRRCPGIAENYSQQIWWRQPSHETSKADEGMKISPIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFQSDLHSNSHRKIVEMRRQKQM 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0275 249 MobiDBLite consensus disorder prediction 15 38 - -
Aed8g0275 249 ProSitePatterns GATA-type zinc finger domain. 182 207 IPR000679 GO:0006355|GO:0043565
Aed8g0275 249 PANTHER GATA TRANSCRIPTION FACTOR 1 12 248 - -
Aed8g0275 249 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 178 239 - -
Aed8g0275 249 Gene3D - 178 248 IPR013088 GO:0006355|GO:0008270
Aed8g0275 249 ProSiteProfiles GATA-type zinc finger domain profile. 176 212 IPR000679 GO:0006355|GO:0043565
Aed8g0275 249 Pfam GATA zinc finger 182 215 IPR000679 GO:0006355|GO:0043565
Aed8g0275 249 PANTHER GATA TRANSCRIPTION FACTOR 12 248 - -
Aed8g0275 249 SMART GATA_3 176 226 IPR000679 GO:0006355|GO:0043565
Aed8g0275 249 CDD ZnF_GATA 181 228 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0275 Aed-Chr8 2326183 2328380 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0275 7 248 C2C2-Gata Transcription Factor Family AT3G24050 42.857 2.83e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed8g0275 GATA 8.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0275 - - gmx:100784527 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0275 8 2326183 2328380 Aed8g0275 8 2326183 2328380 ECH