Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0251 ATGTGTTCCCATTCCCAGAAGACCCTAGCGAGAATCCTCACCAAATTCACCTCCTCCTTCCCTCCATCAACCGCGCAACACCTACTCGCCCAAACCATAACCCACACTCTCCTCAACACACCTGATTCCAAACTACACTCCTCCCTGATCTCCTGCACAACACCCCACGTCACTTACCGTGTCCTCTCCGACCCCACTCTCCCCCCTCGCTCCTGCTTAACCTTCTTCCACCTCCTCCCCAAACCCGACCTCAACGCCCACCTCATCCTCCTCTACCGCCTCTTCTCAGCTAAAAAATTCTCCGCAATGAGAACCCTCTTGAATTCCGTCTTCACCACTCAACGCCCCGTTTCGGCTCTCGTTTCTCTTGTTGATGAATGCGAACATGAGTGCCAGTGCGAGCCCCGCTTTGTTGAGACTCTCTGTGACATGCTATTCAAGGTGTGTGCTGACAACAGAATGTTTAGAGACGCCTTTAAGGTGTTTGATTATGTCATGTCAAAGGGGTTGGTCATAGAGGGCAGGTCTTGCTTCGTGCTTTTGCTTGCTTTGAAGAGATGCAACGAAGCAGAGTTGTCCGTTAGATTCTTTCGCAACATGGTTGAATCCGGTGGCCGCGTTGATATCGCTGTTCAGTCTTTGACTGTTGTGGTTGATGTGCTGTGTAGGAGAGGGGAGGTTGAGAGGGCTAAGGAGTTGATGGATGAGATGGCCGCCAGAGGCATTGTGAGGCCGACCGTCTTTACTTATAACACATTGTTGAATGCTTGCGTTGTAAGGAAGGATCGGAATGGCGTTGATGAGATGCTGGGGGCGATGGAGAGGGAGGGTGTTGAGCCTAGTTTGGCGACGTATACTATTTTGATTGAGTGGTATGCGAGCTCCGGGAGGATCGAGGAGGCAGAGAAGGTGTTTGAGGAAATGCTTGAGAGGGACGTGGAGATGGATGTTTGTGTCTACACGTCGATGATTAGCTGGAACTGTAGGGCGGGGAATGTCAGGAGGGCGTCGGCTCTGTTTGATGAGATGGTTTCGAGGGGCATTGTTCCAAATACTCACACTTTCGGGGCGTTGATTAGTGGAGTGTGCAGGGCGGGCCAAATGGAGGCTGCGGAGATCTTGTTGGAAGAGATGCAGAGTAAGGGGGTTGATACGAATGTGGTCATATTTAACACGATGATGGATGGTTATTGTAAAAAAGGGATGATGGATGAGGCATTCAGGCTGCAGGTTATCATGGAAAAGAAAGGGTTTGAAGTGGATGTGTTTACATACAGCATTTTTGCCAGTGGGCTGTGTAAATTGCATAGGTATGATGAAGCCAAGAGGATGTTGAATGTGATGGTAGAGAAAGGAGTGGCGCCAAACGTTGTGACTTGCGCTACGCTTATTGAGATATATTGTAAGGAAAGAAACCTTGCAGAGGCTGAGAGCTTCTTAAGGAATATGGAGAAACAGGGAGTGGTGCCTAATATTGTTACGTATAATACTCTGATAGATGCATATAGCAAGAATGAAAAAGTAAAGCAAGCTCATATGTTGAAAGCTGAAATGATTGAGAAGGGGCTACCGCCAGATGTTTTTACATACACGTCACTGATACATGGGGAATGTATTGTTGACAGGGTAGATGAGGCTCTGAAGCTTTTCAATGAAATGCTGGTAAAGGGCATAAGAGGAAATGTGAAGACATATACAGCAATTATTTCTGGTTTATCCAAGGAGGGGAGAGCAGATGAAGCTTTCAAGTTGTATGATGAGATGATGAGAATGGGTCTAGTACCTGATGATAGAGTTTTCGCTGCACTTGTCGGCAGCCTTCATAAACCCAGTTCTCATTCTGCTGTGAAACAAAATGAGTATGGGGAACTGAAAACAAACACTTCTGATACCTTGAGCTTGTCATACACTGGTTTGCCTATTTCACACAGGAAGGGTGGTGCCGTTTTGAGTTCATCATTTTTGGGAAGCATCCCTGGAATTTTTAACACGCTTTACCGTCCGGAAGGAATCCTTGCTATTGAAACAGTTGCAAATCTGGGAGTTATGTACTACGTGTTCCTTAATGGGTTGGAGATGAACTGTGACACCATTCTGAGATCAAGCAAGAGGGCTATAACCATTGCAGTTGCTTGCATTCTCACTCCAGTTTTGGGGGGTGCTGGTTTTCTTGCTCTGGAGCATAGGGTATCAGGAGGTTCACCAAACACTTTTGTTACCACTAAAGGGTACTTCTTTTGCTGTGCAATTCTTGCTGTCACAGGTTTTCCAGTCCTTGCTAGGCTCCTATCAGGGCTCAAGATCCTTTACACAAGGCTTGGCAAAGATGCCTTGGCAGCAGCCATGTTAATTGATGCATATGGGTGGATTCTGTTCACAATCTTGATCCCTTATTCCCGTGATGGTGGTAAACCACTCCTCTCAGCAATGTGCACCCTGGGGTTCATTGTATTCTGCTTCTGCATGGTTCGTCCCATCCTGACTCGCGTGATCAAATGCAGAATCAAGTTGGAGACATGGGACTCCTCAAGGTTTCTGGATGTCATGATTGGACTTTTTGTTTGTTCATACATCACAGATTTGCTTGGTGCACACCATGTTGTTGGGGCCTTTGTGTATGGACTAATTTTGCCTAGTGGGAAATTTGCTGATTTGATGATGGAAGTTTTGGATGATTTTGTTACTTCACTTATTGTTCCAGTCTACTTTGCTAGTTTTGGCTTTAGACTACACATGCAGTCAGTTTGGAATGTACACAATTCGGTTTTGTTTCCGATCATCATGGTGGTGGTGTTAACCATTCCAAAAGTTTTAGGCTCTATGTTGGTTACTTTCTACTTTGGTATGTCTGCTAGAGATGGATTGGGCCTTGGATTGCTCCTCAACACTAAGGGCATCATGGCAGTGATTATGTTGAGCATTGCTTGGGAGAAAAATCTTTTGGACCCCTATGCATTCACAATTATGATGCTTTCTATACTATTCATGACTGTGTTGGTCTCTCCCTTGATCAATGTGATATACAAGCCAAAACTCCGGTTCATGCAGACCCAGCGAAGGACTGTACAGAAGCTAAGGTGTGATGCAGAACTTCGAGTTGTGGTTTGTGTTCACAATGCTCACCAAGCCACTGGCATGATCCATGTCCTTGAAGCCACAAATGTATCTAGAATTTCCCCTTTACATGTCTCAGTCCTTCACCTTGTTGAACTCACTAGACATGGCACTGGCCTTCTTGTTGCCCAGATGGACAATGACAATCTAAGTATTCAAGGGGGGTCAACCGAAAGCCACTATGGATCACAGAATGACTTTGAGAGCATAGCCAAGGCATTCGAAGCATTTGCAGAGGAATACAAAGCAGTGAGATTTGAGACCTCAGGCATTGTGTCAACCTATGAGTCCATACATGAGGACATATACACCGTAACACTAGAGAAACATGCAAACCTAATCCTCCTTCCCTTTCACAAACACCTAACCTCAGAAGGTGTGTTGGAAACAACCAACAATGCATTCAGTAACATAAACCAAAACGTGATGCAAGAACCACCTTGTTCTGTTGGGATCTTTTTGAACCGGGGACTCGGGTCATTGTTGAAAACAAAAATGAGCATTGTCATGGTCTTCATCGGAGGGCCGGACGATCGCGAAGCCTTGTCGATTGCGTGGAGAATGGCAGGGCATTCAGGCACAAAGCTGCATGTGGTTAGGCTTCTAATGTCGGGTAGCGAGGCTGCGGAAGAAGAAAAGGCGTTCCATTATGATTCCAAGGGACTTCTATCAACAGTGATGGACAATGTGATGCAGAAAGAGTTGGATGATGAGCAAATGTTACACTTCAGGCACAAGGGGGTGCACAATAATGACTCCATTACTTACTCAGAGAAGGAAGTGAGAATAGAAACTGGTGAGGAGATTCCTCTGATCCTGAATGAGATAGACACACCTGGGTATGACTTGTACATTGTGGGACAAGAGAGTGGCAAGAACTACACAGCTTTTAGGAAGTTGTTGGAATGGTGTGACAACCCTGAACTTGGGGTCATGGGGGACATTGTGGCTTCGGTCAGCTTTGGCTCAATCTCATCACTGCTTGTTGTGCAACAATACACCATGGAGAGAAAACCTAAACCTCAATGTCGCAGAAGATGTCACTCAAAGAAAAATGATCCGGACATATTGTGA 4188 0.4582 MCSHSQKTLARILTKFTSSFPPSTAQHLLAQTITHTLLNTPDSKLHSSLISCTTPHVTYRVLSDPTLPPRSCLTFFHLLPKPDLNAHLILLYRLFSAKKFSAMRTLLNSVFTTQRPVSALVSLVDECEHECQCEPRFVETLCDMLFKVCADNRMFRDAFKVFDYVMSKGLVIEGRSCFVLLLALKRCNEAELSVRFFRNMVESGGRVDIAVQSLTVVVDVLCRRGEVERAKELMDEMAARGIVRPTVFTYNTLLNACVVRKDRNGVDEMLGAMEREGVEPSLATYTILIEWYASSGRIEEAEKVFEEMLERDVEMDVCVYTSMISWNCRAGNVRRASALFDEMVSRGIVPNTHTFGALISGVCRAGQMEAAEILLEEMQSKGVDTNVVIFNTMMDGYCKKGMMDEAFRLQVIMEKKGFEVDVFTYSIFASGLCKLHRYDEAKRMLNVMVEKGVAPNVVTCATLIEIYCKERNLAEAESFLRNMEKQGVVPNIVTYNTLIDAYSKNEKVKQAHMLKAEMIEKGLPPDVFTYTSLIHGECIVDRVDEALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADEAFKLYDEMMRMGLVPDDRVFAALVGSLHKPSSHSAVKQNEYGELKTNTSDTLSLSYTGLPISHRKGGAVLSSSFLGSIPGIFNTLYRPEGILAIETVANLGVMYYVFLNGLEMNCDTILRSSKRAITIAVACILTPVLGGAGFLALEHRVSGGSPNTFVTTKGYFFCCAILAVTGFPVLARLLSGLKILYTRLGKDALAAAMLIDAYGWILFTILIPYSRDGGKPLLSAMCTLGFIVFCFCMVRPILTRVIKCRIKLETWDSSRFLDVMIGLFVCSYITDLLGAHHVVGAFVYGLILPSGKFADLMMEVLDDFVTSLIVPVYFASFGFRLHMQSVWNVHNSVLFPIIMVVVLTIPKVLGSMLVTFYFGMSARDGLGLGLLLNTKGIMAVIMLSIAWEKNLLDPYAFTIMMLSILFMTVLVSPLINVIYKPKLRFMQTQRRTVQKLRCDAELRVVVCVHNAHQATGMIHVLEATNVSRISPLHVSVLHLVELTRHGTGLLVAQMDNDNLSIQGGSTESHYGSQNDFESIAKAFEAFAEEYKAVRFETSGIVSTYESIHEDIYTVTLEKHANLILLPFHKHLTSEGVLETTNNAFSNINQNVMQEPPCSVGIFLNRGLGSLLKTKMSIVMVFIGGPDDREALSIAWRMAGHSGTKLHVVRLLMSGSEAAEEEKAFHYDSKGLLSTVMDNVMQKELDDEQMLHFRHKGVHNNDSITYSEKEVRIETGEEIPLILNEIDTPGYDLYIVGQESGKNYTAFRKLLEWCDNPELGVMGDIVASVSFGSISSLLVVQQYTMERKPKPQCRRRCHSKKNDPDIL 1395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0251 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 561 595 IPR002885 -
Aed8g0251 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Aed8g0251 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Aed8g0251 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Aed8g0251 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Aed8g0251 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Aed8g0251 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Aed8g0251 1395 Pfam Pentatricopeptide repeat domain 233 292 IPR002885 -
Aed8g0251 1395 Gene3D Tetratricopeptide repeat domain 381 451 IPR011990 GO:0005515
Aed8g0251 1395 SUPERFAMILY HCP-like 420 592 - -
Aed8g0251 1395 Pfam PPR repeat family 490 538 IPR002885 -
Aed8g0251 1395 Pfam PPR repeat family 561 607 IPR002885 -
Aed8g0251 1395 Pfam PPR repeat family 316 364 IPR002885 -
Aed8g0251 1395 Pfam PPR repeat family 386 434 IPR002885 -
Aed8g0251 1395 PANTHER CATION/H + ANTIPORTER 647 1381 - -
Aed8g0251 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 351 385 IPR002885 -
Aed8g0251 1395 Gene3D Tetratricopeptide repeat domain 92 212 IPR011990 GO:0005515
Aed8g0251 1395 PANTHER CATION/H(+) ANTIPORTER 21-RELATED 647 1381 - -
Aed8g0251 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Aed8g0251 1395 TIGRFAM PPR: pentatricopeptide repeat domain 284 317 IPR002885 -
Aed8g0251 1395 TIGRFAM PPR: pentatricopeptide repeat domain 353 383 IPR002885 -
Aed8g0251 1395 TIGRFAM PPR: pentatricopeptide repeat domain 458 492 IPR002885 -
Aed8g0251 1395 TIGRFAM PPR: pentatricopeptide repeat domain 423 457 IPR002885 -
Aed8g0251 1395 TIGRFAM PPR: pentatricopeptide repeat domain 319 352 IPR002885 -
Aed8g0251 1395 TIGRFAM PPR: pentatricopeptide repeat domain 528 561 IPR002885 -
Aed8g0251 1395 TIGRFAM PPR: pentatricopeptide repeat domain 248 281 IPR002885 -
Aed8g0251 1395 TIGRFAM PPR: pentatricopeptide repeat domain 388 422 IPR002885 -
Aed8g0251 1395 TIGRFAM PPR: pentatricopeptide repeat domain 564 596 IPR002885 -
Aed8g0251 1395 TIGRFAM PPR: pentatricopeptide repeat domain 493 527 IPR002885 -
Aed8g0251 1395 TIGRFAM PPR: pentatricopeptide repeat domain 215 243 IPR002885 -
Aed8g0251 1395 Pfam Sodium/hydrogen exchanger family 647 1002 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Aed8g0251 1395 Gene3D Tetratricopeptide repeat domain 213 380 IPR011990 GO:0005515
Aed8g0251 1395 Gene3D Tetratricopeptide repeat domain 463 633 IPR011990 GO:0005515
Aed8g0251 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Aed8g0251 1395 Gene3D - 645 1015 IPR038770 -
Aed8g0251 1395 Pfam PPR repeat 451 484 IPR002885 -
Aed8g0251 1395 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0251 Aed-Chr8 2096261 2103311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0251 641 1371 Antiporter Super Family AT2G13620 34.865 6.61e-140 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0251 - - gmx:100792990 1245.34