Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0246 ATGATAATTGATCACAAGACAACACCTGTCACCTTAGATGACCCTTATTATTTCATGTACTGGGGGGAAGTTATGGGTAGAGGTGCCATAATAGAGGAGGTATGGAGGAAGGGACCATGGACATCTGAAGAGGACAGGTTGCTTGTTGAGTATGTCAGGTTACATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGATTGAAAAGAAATGGGAAGAGCTGCAGGTTGAGATGGGTAAATTATCTGAGACCAGACCTCAAGAGGGGACAGATAACACCACAGGAAGAGAGCATAATTCTAGAGTTGCATGCAAGATGGGGAAACAGACAAGAAGTGGTCAACATGCAGCAAAACACCATAGAAGAACAAGGATACTTGTACTCTATGCTCAGTGGCAACTCTTCTGCTTCTTCTGCACCAGAGACCTCAGCTGAAGAAACTTTATGGGATGGTCTGTGGAACATAGATGATGTTCATCATGGCAATTTCAGTGGTGTAGCTTGTGCAGCAAGCAAAGTTGGTCTATACAATCTAGTTGCTCCCTTCTGTTAG 558 0.4444 MIIDHKTTPVTLDDPYYFMYWGEVMGRGAIIEEVWRKGPWTSEEDRLLVEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRQEVVNMQQNTIEEQGYLYSMLSGNSSASSAPETSAEETLWDGLWNIDDVHHGNFSGVACAASKVGLYNLVAPFC 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0246 185 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Aed8g0246 185 SMART sant 36 86 IPR001005 -
Aed8g0246 185 SUPERFAMILY Homeodomain-like 38 112 IPR009057 -
Aed8g0246 185 PANTHER MYB TRANSCRIPTION FACTOR 112 166 - -
Aed8g0246 185 CDD SANT 39 84 IPR001005 -
Aed8g0246 185 Gene3D - 37 89 - -
Aed8g0246 185 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 88 IPR017930 -
Aed8g0246 185 PANTHER MYB TRANSCRIPTION FACTOR 26 112 - -
Aed8g0246 185 ProSiteProfiles Myb-like domain profile. 36 84 IPR001005 -
Aed8g0246 185 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 26 112 IPR044676 GO:0003700|GO:0006355|GO:0043565
Aed8g0246 185 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 112 166 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0246 Aed-Chr8 2055482 2057505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0246 120 185 MYB Transcription Factor Family AT4G13480 37.333 2.80e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed8g0246 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0246 K09422 - gmx:100795981 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0246 8 2055482 2057505 Aed8g0246 8 2055482 2057505 ECH