Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0241 ATGGCTGCCACAGGCATAGCTTCTTTGTTTTCTTCTTCCATTAACAGTGTCAAATGTCTTCGTTCCAAGAACTGCGATCCACTCATAACAACAGTTCCCTCCTCAAACCGCATGTTTGCTGCTTCATATGTCTCACACTTGGTGGAGCCTTTGTCCATTTCTCACAAGTTGTGGGGCCCTAGAATGTCTGCTGCTGTTGCACAAGAAGAGGTTGTTGTGAATGATGAAGAGAAAGTGGTGGTGCCAGAACAGGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGCATTGAAGACTGTAATGCAGTAATAGAAAATCTTGATGGAAAAGAGTTCATGGGAAGAACTTTGAGGGTGAACTTCTCTAACAAACCAAAAGCAAAAGAACCCTTGTACCCTGAAACTGAATACAAGCTTTTTGTGGGGAACCTGTCATGGTCAGTAACTAATGAGAGTTTGACACAAGCCTTTCAAGAATATGGAACAGTGGTTGGAGCTAGGGTCTTGTATGATGGAGAAACCGGAAGATCACGCGGCTACGGCTTCGATCTAGATGGACGGGCTATGCGCGTAAGCTTGGCGCAAGGAAAACGTGCACAGGGTTAA 681 0.4435 MAATGIASLFSSSINSVKCLRSKNCDPLITTVPSSNRMFAASYVSHLVEPLSISHKLWGPRMSAAVAQEEVVVNDEEKVVVPEQDSDSSATKLYFGNLPYSVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKEFMGRTLRVNFSNKPKAKEPLYPETEYKLFVGNLSWSVTNESLTQAFQEYGTVVGARVLYDGETGRSRGYGFDLDGRAMRVSLAQGKRAQG 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0241 226 Gene3D - 152 207 IPR012677 -
Aed8g0241 226 SUPERFAMILY RNA-binding domain, RBD 155 223 IPR035979 GO:0003676
Aed8g0241 226 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 207 IPR000504 GO:0003723
Aed8g0241 226 SMART rrm1_1 163 217 IPR000504 GO:0003723
Aed8g0241 226 SMART rrm1_1 70 145 IPR000504 GO:0003723
Aed8g0241 226 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 143 IPR000504 GO:0003723
Aed8g0241 226 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 207 IPR000504 GO:0003723
Aed8g0241 226 PANTHER OS02G0815200 PROTEIN 102 207 - -
Aed8g0241 226 Gene3D - 101 151 IPR012677 -
Aed8g0241 226 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 149 IPR000504 GO:0003723
Aed8g0241 226 SUPERFAMILY RNA-binding domain, RBD 84 152 IPR035979 GO:0003676
Aed8g0241 226 PANTHER OS02G0815200 PROTEIN 102 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0241 Aed-Chr8 2029761 2032422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0241 95 207 Eukaryotic Initiation Factors Gene Family AT4G34110 31.579 6.39e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0241 - - gmx:100820203 339.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0241 8 2029761 2032422 Aed8g0241 8 2029761 2032422 ECH
Aed2g2044 2 24818084 24821114 Aed8g0241 8 2029761 2032422 PCT