Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0208 ATGGCGGAAGAAGAACCTTCTATTACATCGCCGCCGCCGGGAACGTTGCACAAGTTCATGTCCCGCAACGGCAAGGCCGTCACAGCCGCCAAGCCTCTCACCGTCGTCCGCGCAACCTCCAGCATCGGCGGCGCGCGCGTTCTCGCCGTGCCGCCTAACTCGAACGTGAATGTTCCACCGCCGCTAGAGGAAGAAGGAGAAGGCGAAACCGGCTTCGACATTTCTCGTCCCTGGGCCCCGAAAGCAACGCAACAACAACAGCAACAACGGCTTTCGTTCGACGAGTTTCTCGTGGCCACGAACACGATAATCGCGACCGCAGATGAGGCTATGAAATCGATGATGACGCCGCTGGAAGAAGAGAGAGAAGAAGAAGGAGAGGAAGCCGAATCGTCACCACCGGTTCAACCGGTGCAGAAGAAGAAAGTGGTTACCGATGACGTGGAGGTTAGTAAAGCTACGGAGAAGAGGGATATTCCGAATCTCGAGGACGGAGAGTTTCCGGAAGAGCCAGGGTGGTCTCTTCTCGGGAGGAAGGTTGAGGTTGCGGTTTCGATGGCCAGAGGAGTGAACAGATTGGTGGACAATGAAATCGTTCATTTCAATTTTCCTCTTCCGACTTACTCCAGCAAGTCTCAGTGGATCGTTCGCGCCTCAACCCACCGTTCTGGAGAGGTTGGGAGGATGCCAATGGAATGGGCAAAGATTGTGATTCCGGCTGTGCAATCTGGAAGGGTTAAGGTTCGAGGCCGGTGCATTGCTGCGCCAGTTAAACTGCAAATGATGCAAGAGATTATGTTTATAGTGAGCTTTTATATTCACCACTCTGTATTTGCTGAGCGTGTTGATACCTCTTGGAGGCTAGAGGCTTGTGGTAAAATTGATGATGCTGTTTATCCGCTTCTTGCCCTATTAAAAATGCTAGAGATCAAGCCAAGTCAAAAGGCTCAATTCACTCCTGAGGATATAGATTCTCGTAAGCGATTGCTCTATGCAAAGGCTGATCCAGATGAAGCTTCAGCATTGCCCTTGATCAAGCGAAGAAAGGGTGCTGAGCCCCTTCCAGAGCAAAATAACGATGAACAAGCTCTTTCAGAGTCAGCTTTGAATAAACTTGTTGGGGCTGCAGAAATCTATTACCTCAAGGAGAGGGAAGCCCCAAAGGCACTTGTGTGTAGTTTAAAGCCTTACCAGAAGCAGGCATTATATTGGATGACCGAGATAGAGAAAGGGATGGATATTGAGACTGCAGAAAGCAATCTGCATCCCTGCTGGTCATCCTACACTATATGCAATGGAAGGACGATTTATGTGAATATTTTTACTGGAGAGGCAGCTAAAATATTTCCAAAAGCAACGCAGATGGCAAGAGGAGGAATTCTAGCGGATGCAATGGGACTTGGAAAGACGGTTATGACAATTGCTTTGATACTCAGTAACCCAGGCAGAGGCAACTCAGAAAACAAGGATGAAGAGAATGTAACAAATACAAGAAAGAATGCAAACATTTTGAATAAAGTTGAGGGTGGCACACTTATTGTTTGTCCCATGGCTTTGTTAGGTCAATGGAAGGATGAGCTTGACATGCATTCAAAGCCAGATAGTATATCCATATTTGTTCATTATGGTGGTGGAAGAACTAATGATCCCAGGTTGATCTCAGGGCATGATGTTGTCTTAACAACGTACGGTGTCCTACAAGCTTCATACAAAAATGATGGAGAAAATAGCATCTACCACAGAGTCCAGTGGTACAGGGTGGTGCTAGATGAAGCTCATAACATAAAAGCCCATCGGAATCAGACTGCCCAGTCTGCTTTTACTCTGTCCTCACACAGCCGCTGGTGTTTAACTGGAACACCGCTTCAGAATAGCTTGGAAGATCTATACAGTCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGCAATGGTGGCAGAAGTTGATTCAAAGGCCTTATGAGAATGGTGATCCAAGATCCCTGAAGTTGGTCAAGGCCATTTTGAGGATGCTGATGTTAAGAAGAACGAAGGAAACGAAGGATAAGAATGGAAGGCCGATACTTTTCCTGCCTCCAATTGATATTCAGTTGATTGAGTGTGAACAATCAGAATCTGAACGGGACTTTTACGAGGCCCTTTTCGTGAGATCTAAAATTCAATTTGATCAGTACGTTGCACAAGGAAAGGTTCTTCACCATTATGCGAATATCCTTGACCTACTGATGCAGTTGAGGCGCGGAAGCAATACCCAGAAATATGCAGACTTAAGCAGACTCGCAAGAAGATTCCTTCAGTCTAATACTGAATGCCCTGATGAAATCGATCAAAATGATCCACAGCAGCAAGCAGAGTTGAACAAACTCGCAAGTAGATTACTTACAAAATCTGCTTCTTCTTCGCAATCCATTCAACCACATGCATACATTGCCGAAGTTTTGGAGAACATTCAAAAGGGTGACATCGTAGAATGCTCTATATGTATGGAATCTCCAGAAGATCCAGTGTTTACACCATGTGCACATAAATTTTGTAGAGAATGTATATTCAGTTGCTGGGGAAACTCAACGGGTGGCAAGTGTCCAATCTGTCGTCAATTGCTCCAGAAAGAGGATCTGATTACTTGTCCATCTGAGAGCCCATTCAAAGTTGATATCAAGAACAATGTGACAGAGTCTTCAAAGGTTTCGAAGCTATTTGAATTCCTGCAACGTATTCTGGACACTTCAAGTGAAAAGAGTATTGTCTTCAGTCAGTGGACATCATTTTTTGATCTGTTGGAGAATCCATTGAGGAGGAGAGGAATTGGTTTTTTGAGATATGATGGGAAATTGACTCAGAAACAGAGGGAGAAAGTTCTGGATGAATTCAATGTGACAAGAGAAAAAAGGGTTTTGTTGATGTCACTAAAGGCTGGTGGTGTGGGCTTGAACTTAACTGCAGCCTCAAATGTTTTCATTATGGACACAGTGGAAGATCGATTGCAACAAGTTCAAGCCAGGAAACAAATGCTGATATCGGGTACCCTCACGGACGATGAGGTTCGAACTGCAAGGATTCAAGACCTCAAAATGCTTTTCACATGA 3090 0.4534 MAEEEPSITSPPPGTLHKFMSRNGKAVTAAKPLTVVRATSSIGGARVLAVPPNSNVNVPPPLEEEGEGETGFDISRPWAPKATQQQQQQRLSFDEFLVATNTIIATADEAMKSMMTPLEEEREEEGEEAESSPPVQPVQKKKVVTDDVEVSKATEKRDIPNLEDGEFPEEPGWSLLGRKVEVAVSMARGVNRLVDNEIVHFNFPLPTYSSKSQWIVRASTHRSGEVGRMPMEWAKIVIPAVQSGRVKVRGRCIAAPVKLQMMQEIMFIVSFYIHHSVFAERVDTSWRLEACGKIDDAVYPLLALLKMLEIKPSQKAQFTPEDIDSRKRLLYAKADPDEASALPLIKRRKGAEPLPEQNNDEQALSESALNKLVGAAEIYYLKEREAPKALVCSLKPYQKQALYWMTEIEKGMDIETAESNLHPCWSSYTICNGRTIYVNIFTGEAAKIFPKATQMARGGILADAMGLGKTVMTIALILSNPGRGNSENKDEENVTNTRKNANILNKVEGGTLIVCPMALLGQWKDELDMHSKPDSISIFVHYGGGRTNDPRLISGHDVVLTTYGVLQASYKNDGENSIYHRVQWYRVVLDEAHNIKAHRNQTAQSAFTLSSHSRWCLTGTPLQNSLEDLYSLLCFLRVEPWCNWQWWQKLIQRPYENGDPRSLKLVKAILRMLMLRRTKETKDKNGRPILFLPPIDIQLIECEQSESERDFYEALFVRSKIQFDQYVAQGKVLHHYANILDLLMQLRRGSNTQKYADLSRLARRFLQSNTECPDEIDQNDPQQQAELNKLASRLLTKSASSSQSIQPHAYIAEVLENIQKGDIVECSICMESPEDPVFTPCAHKFCRECIFSCWGNSTGGKCPICRQLLQKEDLITCPSESPFKVDIKNNVTESSKVSKLFEFLQRILDTSSEKSIVFSQWTSFFDLLENPLRRRGIGFLRYDGKLTQKQREKVLDEFNVTREKRVLLMSLKAGGVGLNLTAASNVFIMDTVEDRLQQVQARKQMLISGTLTDDEVRTARIQDLKMLFT 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0208 1029 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 902 1029 IPR001650 -
Aed8g0208 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 583 1002 IPR027417 -
Aed8g0208 1029 PANTHER DNA REPAIR PROTEIN RAD5B 340 993 - -
Aed8g0208 1029 PANTHER DNA REPAIR PROTEIN RAD5B 990 1028 - -
Aed8g0208 1029 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 819 874 IPR013083 -
Aed8g0208 1029 Gene3D - 443 678 IPR038718 -
Aed8g0208 1029 MobiDBLite consensus disorder prediction 116 152 - -
Aed8g0208 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 381 677 IPR027417 -
Aed8g0208 1029 Pfam SNF2-related domain 397 753 IPR000330 GO:0005524|GO:0140658
Aed8g0208 1029 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 340 993 - -
Aed8g0208 1029 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 990 1028 - -
Aed8g0208 1029 SMART ring_2 826 865 IPR001841 -
Aed8g0208 1029 Pfam HIRAN domain 187 266 IPR014905 GO:0003676|GO:0008270|GO:0016818
Aed8g0208 1029 SMART helicmild6 926 1004 IPR001650 -
Aed8g0208 1029 ProSitePatterns Zinc finger RING-type signature. 841 850 IPR017907 -
Aed8g0208 1029 Pfam Zinc finger, C3HC4 type (RING finger) 826 865 IPR018957 GO:0046872
Aed8g0208 1029 Gene3D - 693 1002 IPR027417 -
Aed8g0208 1029 ProSiteProfiles Zinc finger RING-type profile. 826 866 IPR001841 -
Aed8g0208 1029 CDD SF2_C_SNF 888 990 - -
Aed8g0208 1029 SMART ultradead3 390 647 IPR014001 -
Aed8g0208 1029 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 450 639 IPR014001 -
Aed8g0208 1029 SUPERFAMILY RING/U-box 811 871 - -
Aed8g0208 1029 Pfam Helicase conserved C-terminal domain 897 1001 IPR001650 -
Aed8g0208 1029 MobiDBLite consensus disorder prediction 49 87 - -
Aed8g0208 1029 CDD DEXDc_SHPRH-like 394 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0208 Aed-Chr8 1767440 1773050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0208 162 1028 RAD5 or RAD16-like Gene Family AT5G43530 57.019 0.0 1070
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed8g0208 SNF2_N 1.5e-76 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0208 K15505 - gmx:100806677 1675.22