Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0204 ATGGATTTTGTGAGACAAGCTCTTTCCCCTTGCACAAATCCTCCAAATCATGTGACTTCAAACTATTCCTTCTTAGTAATCCTTGTGATAGGAATGATGTTTACATCTTTCTTCCTTATAGGCTACTACATGTTAGTTGTCAAGTGCTGCCTCAATTGGCCCCATATTGAGCATGTAAGGATTTTCTCTCTATCTAGGCATGGTGAGGAACCATCTGCAGCACACTCAGCAGCATCTGAGCCTAGAGGGCTAGAGGAATCAGTGATTAAACTAATTCCAGTGATTCAATATAAAGGGGAAACAGAACTTGGTGAAAGAAGAAGCTTTAGTGAGTGTTCAGTTTGCTTGAGTGAGTTTCAACAAGATGAGAAGCTGAGGGTTATACCAAACTGCAGCCATGTGTTTCACATTGATTGCATAGATGTGTGGCTTCAGAACAATGTTCATTGTCCACTTTGTAGAGGAACTGTTTCTTCCTTGGCAAGTCAAGTCCATGTTGACCAAGTGAACCTTCTCACTCCAAGGCCTTCCCCTCAGGGTCAAAGCCAAAGCATTGAAAACCTCATTGGTGCTTCTTCTTCTGCTGCTGCTGATGATGAAGGAGGTTTTGAATTTGTTGTGATTGACTTGGATGGTGAGCATGATGATATAGAGCAAAACTTGCAAGCAAGACAAGAAGAGTTACCAATACCAATACCAACATGTCCTTTTGTTAGTCTTTCTAATTCACAAAGGAAGAAAGCAAGGAAGCTTCACAAAGTGACAAGTTTTGGAGATGAGCGCGTTGGTTTTAGAGACAAAGATGAAAGGTTATCAATTCAAGCCATGAGGAGGTCTTTCTCCATGGATTCATCAGTGGATAGAAAGTTTTATGGGGAAGTTCAACAGGCTTTACAGCAACAACAAAATGAAGCTTGTGGTGGTGATAGTGTGCAACAGCCATCAACTACTCAATCAATCAGTCCACTAGCTGAGATTCGACATCATGTAGCATTTCTCTAA 1002 0.4122 MDFVRQALSPCTNPPNHVTSNYSFLVILVIGMMFTSFFLIGYYMLVVKCCLNWPHIEHVRIFSLSRHGEEPSAAHSAASEPRGLEESVIKLIPVIQYKGETELGERRSFSECSVCLSEFQQDEKLRVIPNCSHVFHIDCIDVWLQNNVHCPLCRGTVSSLASQVHVDQVNLLTPRPSPQGQSQSIENLIGASSSAAADDEGGFEFVVIDLDGEHDDIEQNLQARQEELPIPIPTCPFVSLSNSQRKKARKLHKVTSFGDERVGFRDKDERLSIQAMRRSFSMDSSVDRKFYGEVQQALQQQQNEACGGDSVQQPSTTQSISPLAEIRHHVAFL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0204 333 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Aed8g0204 333 SMART ring_2 112 153 IPR001841 -
Aed8g0204 333 Pfam Ring finger domain 111 154 IPR001841 -
Aed8g0204 333 PANTHER RING-H2 FINGER PROTEIN ATL16 11 310 - -
Aed8g0204 333 PANTHER RING-H2 FINGER PROTEIN ATL16 11 310 IPR044600 GO:0016567|GO:0016740
Aed8g0204 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 159 IPR013083 -
Aed8g0204 333 CDD RING-H2_PA-TM-RING 111 154 - -
Aed8g0204 333 SUPERFAMILY RING/U-box 111 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0204 Aed-Chr8 1732462 1734846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0204 20 304 C3H Transcription Factor Family AT1G04360 39.414 2.40e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0204 - - gmx:100812364 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0183 4 1331854 1332675 Aed8g0204 8 1732462 1734846 PCT