Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed8g0201 ATGGATAGTTCCTCCATCCTCCACTCATCAAACTCCTCAGAATCCTCATTAGGGTCTCCTCATCACTACCTCCCCTTCAACGAAAACGACCCTGAAGAGATGCTCCTCTACGGCATGATCACATCATATCAAGAAAAAGTAATAATCAAGGAAGAGGAAGTGAACTCAGAGGACAAGAAGAAGAGCTTCCGCGGTGTGCGGAAGCGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGACTCCACGCGACAGGGCATAAGGGTGTGGCTTGGGACATTCGACAGCGCCGAGGCTGCGGCGCTGGCGTATGACCAAGCCGCCTTCTCCACAAGGGGCCCTGCCGCGGTGCTCAACTTCCCCGTGGAGAAGGTGAAGGAGTCCCTTAGGGACATGAATTGTGCTCCCTCTCAGCTTGATGATGGATGTTCCCCCGTTGTGGCCTTGAAGAGGAGACACTCCTTGGGACGCAAAATGGCTTCCAAGAAGAAGAAGAAGGAGGAAGAGAGTGACGATGATGTTAGGTTAGAGAATGTGGTTGTGTTCGAAGACCTAGGGGCAGAGTATTTGGAAAACTTGTTGATGTCCTCTGATGATACTGGATGTACTTGGTGA 612 0.5229 MDSSSILHSSNSSESSLGSPHHYLPFNENDPEEMLLYGMITSYQEKVIIKEEEVNSEDKKKSFRGVRKRPWGKFAAEIRDSTRQGIRVWLGTFDSAEAAALAYDQAAFSTRGPAAVLNFPVEKVKESLRDMNCAPSQLDDGCSPVVALKRRHSLGRKMASKKKKKEEESDDDVRLENVVVFEDLGAEYLENLLMSSDDTGCTW 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed8g0201 203 SUPERFAMILY DNA-binding domain 63 122 IPR016177 GO:0003677
Aed8g0201 203 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Aed8g0201 203 MobiDBLite consensus disorder prediction 1 25 - -
Aed8g0201 203 CDD AP2 61 121 IPR001471 GO:0003700|GO:0006355
Aed8g0201 203 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Aed8g0201 203 PANTHER DNA-BINDING DOMAIN 16 195 IPR044808 GO:0003700|GO:0009873
Aed8g0201 203 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Aed8g0201 203 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Aed8g0201 203 MobiDBLite consensus disorder prediction 1 22 - -
Aed8g0201 203 Pfam AP2 domain 63 112 IPR001471 GO:0003700|GO:0006355
Aed8g0201 203 Gene3D AP2/ERF domain 61 122 IPR036955 GO:0003700|GO:0006355
Aed8g0201 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 16 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed8g0201 Aed-Chr8 1720968 1721579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed8g0201 24 203 AP2-EREBP Transcription Factor Family AT3G23240 59.358 1.10e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed8g0201 AP2 4.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed8g0201 K14516 - gmx:100780576 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed8g0201 8 1720968 1721579 Aed8g0201 8 1720968 1721579 ECH
Aed4g0181 4 1324202 1324903 Aed8g0201 8 1720968 1721579 PCT